Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0078
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32800.1 68414.m04043 PHD finger protein-related contains low...    28   1.3  
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    27   2.3  
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote...    27   4.0  
At1g30220.1 68414.m03697 sugar transporter family protein simila...    27   4.0  
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea...    26   7.0  
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea...    26   7.0  
At2g01930.2 68415.m00128 expressed protein                             26   7.0  
At2g01930.1 68415.m00127 expressed protein                             26   7.0  
At2g25940.1 68415.m03113 vacuolar processing enzyme alpha / alph...    25   9.3  

>At1g32800.1 68414.m04043 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 398

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -1

Query: 142 AATRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEL--HH 20
           AA    GD+ G   +     R   +SD+  NGTG   E   HH
Sbjct: 314 AALETGGDESGNTEIGVECSREQNLSDVHANGTGKQEEKAGHH 356


>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 67  IQSHCVSRGSASVGRHLGRRWGVLLQLQNGFVERYHVP 180
           +Q H V   + SV ++LG     +++L  G+VE+Y  P
Sbjct: 550 VQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGKP 587


>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
           kinase, putative CLV1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 783

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  WVCIRRPPSWSPLGRVAAATKWICRTVSCTYLFS 191
           W C  RP +  P+ +V    + IC++V    +FS
Sbjct: 710 WCCEDRPETRPPMSKVVKELEGICQSVREPEMFS 743


>At1g30220.1 68414.m03697 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 580

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 6   GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRVAAATKWICRTV 170
           G   ++ S G   VP+   S+  PLRF  +C          G +AA   WI   +
Sbjct: 461 GLYIIFFSPGMGTVPWIVNSEIYPLRFRGIC----------GGIAATANWISNLI 505


>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
           family protein contains ten G-protein beta-subunit
           (beta-transducin) WD-40 repeats
          Length = 1308

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 57  ARSDTVPLRFAWVCIRRPPSWSPLGRVAAATK 152
           A S+  P+ F W+    P  + P G++  + K
Sbjct: 894 ASSEVSPVTFQWLATDMPTKYRPCGKIEKSPK 925


>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
           family protein contains ten G-protein beta-subunit
           (beta-transducin) WD-40 repeats
          Length = 1308

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 57  ARSDTVPLRFAWVCIRRPPSWSPLGRVAAATK 152
           A S+  P+ F W+    P  + P G++  + K
Sbjct: 894 ASSEVSPVTFQWLATDMPTKYRPCGKIEKSPK 925


>At2g01930.2 68415.m00128 expressed protein
          Length = 283

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 155 PFCSCSNTPQRRPRW 111
           P C+C+ TPQ+  RW
Sbjct: 193 PVCTCTGTPQQCYRW 207


>At2g01930.1 68415.m00127 expressed protein
          Length = 283

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 155 PFCSCSNTPQRRPRW 111
           P C+C+ TPQ+  RW
Sbjct: 193 PVCTCTGTPQQCYRW 207


>At2g25940.1 68415.m03113 vacuolar processing enzyme alpha /
           alpha-VPE identical to SP|P49047 Vacuolar processing
           enzyme, alpha-isozyme precursor (EC 3.4.22.-)
           (Alpha-VPE) {Arabidopsis thaliana}
          Length = 478

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 113 WRPTDADPRETQWDCIRSGTKWHW 42
           +RPT+ D   T+W  + +G+  +W
Sbjct: 33  FRPTENDDDSTKWAVLVAGSSGYW 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,181,819
Number of Sequences: 28952
Number of extensions: 137344
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)