Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0077
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.8  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.7  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   8.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   8.9  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 460 GFNNNIQRINLASGSNTLLVLGPGLPA 540
           G NN +  I LA  +  LLV+GPG+ A
Sbjct: 491 GGNNRLAGIMLALATVALLVIGPGIIA 517


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 328 TLAFGTANIFSGGTRVTTSSVHMHGSYNMNN 420
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 388 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLAS 498
           V  H   +MNNLH  +  ++H      N+   I+  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 127 GALKTLGPGDTDLGVVVKFDSLFCHDHGRQRHQYCCEDLP 8
           G+L T G G T LG++        H+ G   H YC E  P
Sbjct: 160 GSLATSGYG-TALGIIRSL-----HESGNLEHAYCTETRP 193


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
 Frame = +1

Query: 355 FSGGTRVTTSSVHMHGSYNMNNLHNDV----AVINHNHVGFNNNIQRINLASGSNTLLVL 522
           ++G T +TT+  H         ++ +      V     VG++ ++      SGSN+++  
Sbjct: 638 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYSGSVTTTLTGSGSNSIVTE 697

Query: 523 GPGLPASAELPMLLREPTTNKNAKSAFRSLLTPS 624
              +P +  +       TT     +   S++T S
Sbjct: 698 TVDVPTTTSVNYGYTTITTGWTGSTTLTSIVTHS 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,821
Number of Sequences: 5004
Number of extensions: 36391
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)