Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0077
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 0.98
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 30 1.7
01_07_0385 - 43212580-43213142,43213234-43213612 29 2.3
12_02_0304 + 17112677-17113195 29 3.0
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 3.0
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 28 5.2
02_02_0549 + 11410129-11412180 28 5.2
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 28 5.2
11_07_0002 - 27171791-27172222 28 6.9
10_02_0061 - 4812903-4812940,4813140-4813536 28 6.9
09_02_0279 + 6702517-6702948 28 6.9
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 6.9
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 28 6.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.9
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 27 9.2
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 27 9.2
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 9.2
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 27 9.2
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1
Query: 252 APQIEVLPFVSAITSPARWG*APALAAEPPTILV 151
AP LPF S + + AR G APAL+A P LV
Sbjct: 10 APARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 387 TGGGDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*EAPQIEV 235
TG G +SG SC +G+ LGI G +V + GQ AP E+
Sbjct: 206 TGNGHGQSSGSSDSCRDDDGD---LGIDGNASVGDANAVKSGQVPAPAKEI 253
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 384 GGGDPGASGEDVSCAKSEGELTSLGIPGPP--AVSSGHRA 271
GGGD GAS VS A + +G+ PP V +G RA
Sbjct: 182 GGGDGGASSVVVSAAAAAARRLPVGVRKPPLHVVVTGERA 221
>12_02_0304 + 17112677-17113195
Length = 172
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 311 PRLVSSPSLLAQLTSSPEAPGSPPPV 388
PR SPS+ A+ T +P SPPPV
Sbjct: 42 PRRAPSPSVTAEPTPAPVIAPSPPPV 67
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 360 GEDVSCAKSEGELTSLGIPGPPAVSSGHRAG 268
GED + A +EGE G PG A + G R G
Sbjct: 203 GEDAAAAGAEGERKEGGEPGKAAAAPGGRIG 233
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 311 PRLVSSPSLLAQLTSSPEAPGSPPP 385
PRLVSSP+ L + P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 331 LAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNN 474
LA +F+G V ++S H+ + ++ + N D IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ 176
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 369 GASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVG 262
GA G V +K+ GE G P PAV GH A G
Sbjct: 308 GALGHIVRMSKTIGEEIGCGHPVWPAVIHGHYASAG 343
>11_07_0002 - 27171791-27172222
Length = 143
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -1
Query: 387 TGGGDPGASGEDVSCAKSEGE---LTSLGIPGPPAVSSGHRAG 268
T GG PG SG S A + T G+ G PA + G G
Sbjct: 44 TSGGSPGGSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGG 86
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 33 WRWRPWSW---QKRLSNLTTTPRSVSPGPRVLSAPRKP 137
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>09_02_0279 + 6702517-6702948
Length = 143
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -1
Query: 387 TGGGDPGASGEDVSCAKSEGE---LTSLGIPGPPAVSSGHRAG 268
T GG PG SG S A + T G+ G PA + G G
Sbjct: 44 TSGGSPGGSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGG 86
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 323 SSPSLLAQLTSSPEAPGSPPP 385
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 369 GASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVG 262
GA V +++ GE S G P PAV GH A G
Sbjct: 287 GALSHIVKMSRAIGEEISCGHPAWPAVIHGHYASAG 322
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 197 GGEHQRWRQNHPQSW 153
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 311 PRLVSSPSLLAQLTSSPEAPGSPPPVS 391
PRLVSSP +L SSP A PP+S
Sbjct: 24 PRLVSSP----RLASSPAACAEQPPIS 46
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +1
Query: 271 RSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINH 450
+ + A H RD L G F G + S+ + Y N LH +A + H
Sbjct: 458 KGIIAHHLRTDRDVSQLFTKLTKGVVFDFYGNYYLMPLSLALEAHYQ-NRLHRWIAWLKH 516
Query: 451 NHV 459
NH+
Sbjct: 517 NHL 519
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 151 YQDCGWFCRQRWCSPPSCWTCDR 219
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -2
Query: 212 QVQQDGGEHQRWRQNHP---QSWYRRSQRLPRRA*DSRPGGYRSW 87
++ + G EH+ W + H Q W R QR+ + P Y +
Sbjct: 1463 RISRRGREHENWEETHHEYIQEWEARRQRIFPESEQYDPSSYEEY 1507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,138
Number of Sequences: 37544
Number of extensions: 318538
Number of successful extensions: 1486
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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