Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0077
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.012
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14) 30 1.3
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 30 1.3
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 30 1.8
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 29 3.1
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 28 5.4
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16) 27 9.4
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 27 9.4
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 196 PSCWTCDRTHEWQNFNL-RSFLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTR 372
P W + ++ ++ + LLT ++TAAHC D A +TL G + G
Sbjct: 249 PHSWPWQLSFRYKGSHICGASLLTPGWALTAAHCLTLSD-DASDYTLVAGAHQRENDGQV 307
Query: 373 VTTSSVHMHGSYNMNNLHNDVAVIN-HNHVGFNNNIQRINLAS 498
S + H ++M ++ NDVA++ +V ++ + I L S
Sbjct: 308 FGISKIRKHKGFSMVHVRNDVALLKLSTYVQLSDKVGTICLPS 350
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 235 NFNLRSFLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVH---MHGS 405
NF L+++T VTAAHC +R + Q+ + G N T +V H
Sbjct: 499 NFICGGSLVSSTWVVTAAHC-VARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQ 557
Query: 406 YNMNNLHNDVAVI 444
YN L ND+A+I
Sbjct: 558 YNNPRLSNDIALI 570
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 415 NNLHNDVAVINHNHVG-FNNNIQRINLASGSNTLLV 519
NN++N+ +IN+N++ NNNI IN+ +N +++
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININIIINNNNIII 444
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 391 HMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLASGSNTLLVL 522
H H + +NN N++ +IN+N++ NNNI N+ +N ++++
Sbjct: 386 HHHQNIIINN--NNI-IINNNNIIINNNINNNNIIINNNNIIII 426
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -3
Query: 301 TSSSEQRSQSGCWSVRSSAD*SSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGA 122
+SSS S SG S SS++ S DHK++ S +T + GT++ GF G
Sbjct: 709 SSSSGSSSSSGSSSSGSSSESESETVGNDHKTASKTKVQSTVIQTCNLDGTIDSKGFAGD 768
Query: 121 L 119
L
Sbjct: 769 L 769
>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
Length = 904
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 529 GLPASAELPMLLREPTTNKNAKSAFRSLLTP 621
GLPAS LP ++ ++++ S+ SLLTP
Sbjct: 624 GLPASLSLPTVIHTSARSRSSSSSSASLLTP 654
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -3
Query: 325 TDEPGHPWTSSSEQRSQSGCWSVRSSAD*SSAIRECDHKSSKMGVSTSVGGRTTHNPGTV 146
T + WTS+ + Q+ S +A+ R+CD +S S TTH G
Sbjct: 242 TSTADNQWTSTEDVSVQALSGSPTEAAN-----RDCDDSASSTSDKESAPDETTHASGNT 296
Query: 145 EVSGF 131
+++GF
Sbjct: 297 KLTGF 301
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 298 RSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNNI 477
RS DA+ + N + +++ + N NN +N++ IN+N+ NNNI
Sbjct: 61 RSADAKLTNILIITNNKNNNNNNNNHHHHHNNINNNNNNNNNNNNINNINNNNNNNNNNI 120
Query: 478 QRINLASGSN 507
N + +N
Sbjct: 121 NNNNNNNNNN 130
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 409 NMNNLHNDVAVINHNHVGFNNNIQRINLASGSNTLLV 519
N+NN +N++ N+N++ NNNI N + +NT ++
Sbjct: 234 NINNNNNNIN--NNNNINNNNNINNNNNNNNNNTQII 268
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 64 LFCHDHGRQRHQYCCEDLPRA 2
+FC DHG ++ +Y CE +A
Sbjct: 283 IFCSDHGHEKLRYFCESCDQA 303
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 370 RVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNN 474
R +S++ + N N+++N+ + IN+N+ NNN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16)
Length = 417
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 469 NNIQRINLASGSNTLLVLGPGLPASAELPMLLREPTTNKNAKSAFRSLL 615
+++QR+ GSN P AELP LL E +NA R L
Sbjct: 112 SHVQRLVPGHGSNVRTARQPPTTPRAELPPLLAEIEAAENADFRHRGTL 160
>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 349 NIFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINHNHVGFNNN 474
NI S ++ H + + N +N HN+ NHN+ NNN
Sbjct: 171 NINSSNNNNDQNNNHNNNNNNNSNNHNNHKNNNHNNNNSNNN 212
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 277 VTAAHCWRSRDAQARQFTLAFGTANIFSGGTR----VTTSSVHMHGSYNMNNLHNDVAVI 444
+TAAHC S+ + + + G + T + S++ H +YN ++ND+A++
Sbjct: 428 LTAAHCISSK--RPAEVVVRLGAHSRLGSLTTDMQDIKVSAIITHSNYNSRTMYNDIALL 485
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 211 KSSKMGVSTSVGGRTTHNPGTVEVSGFLGALKTLGPG 101
KSSK S+S TTH P V + T GPG
Sbjct: 61 KSSKSSKSSSTSSSTTHGPTPVPATPSSPPRPTPGPG 97
>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 376 TTSSVHMHGSYNMNNLHND 432
TTS +HMH S+N + L+ D
Sbjct: 170 TTSGLHMHDSHNQSYLYGD 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,402
Number of Sequences: 59808
Number of extensions: 330760
Number of successful extensions: 3252
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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