Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0075
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    31   0.70 
10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056     29   3.8  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    29   3.8  
02_01_0100 + 743467-744868,745066-745127                               29   3.8  
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888...    28   6.6  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    28   8.7  
02_01_0752 - 5583757-5584092                                           28   8.7  
01_06_0128 - 26727484-26728383                                         28   8.7  

>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 233 SDH-PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSR 126
           +DH P P DDRAT+  H     HH  GG  G   G R
Sbjct: 80  ADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116


>10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056
          Length = 324

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 485 TVYASGHGVSGRMVLLPRS*TGYTCVLSPTRLAPST-SAPD 604
           T+ A G G SG  + +P +  G T   SPT +AP   S+PD
Sbjct: 162 TIEAEGGGSSGSDLFIPGATDGSTDPSSPTTMAPLLGSSPD 202


>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 306 YSGVVKFVTPARMTTVMLRQHS-ELQ*SPTPCGR*SHRKQTLRR-LDPPCGGRRGGGADR 133
           Y+ VV+    A++TTV L QH  +++  P   G  +    +LR  L  PC    GG    
Sbjct: 475 YTAVVQVPADAQLTTVSLAQHDIDIEDQPEG-GSNALNVNSLRMLLHKPCIQPSGGVQRL 533

Query: 132 ESPPNQIQY 106
           +S P + +Y
Sbjct: 534 QSSPQESEY 542


>02_01_0100 + 743467-744868,745066-745127
          Length = 487

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 224 PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFV 78
           PLP DD ATA   S  W++  +   V     S   T ++T   G+ I V
Sbjct: 25  PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72


>01_06_1646 -
           38887178-38887271,38888230-38888270,38888744-38888827,
           38888933-38889080,38889232-38889299,38889563-38889634,
           38890479-38890673
          Length = 233

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 460 CLQELRRTHRVCQRSWCLWTNGATPEVLNWVY 555
           C   L+  HR C + WC      T E+ N VY
Sbjct: 60  CTGTLKFAHRKCIQRWCDKKGNITCEICNQVY 91


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = -3

Query: 248 NTVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVG----VLTGSRL--PTRYNTEICGIY 87
           N   C+ H +P++ +++ SK    W+++A   VV      L  +R+  P  Y+   C + 
Sbjct: 362 NPALCT-HRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEWRCMMS 420

Query: 86  IFVDIFNEV 60
           IF D+  E+
Sbjct: 421 IFSDMIEEI 429


>02_01_0752 - 5583757-5584092
          Length = 111

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 190 NTPPVGSTMRRAAWWG 143
           N PP G   +RA WWG
Sbjct: 3   NVPPAGGRRQRAWWWG 18


>01_06_0128 - 26727484-26728383
          Length = 299

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 174 DPPCGGRRGGGADRESPPNQI 112
           D  CGGRR G   RE PP Q+
Sbjct: 23  DEGCGGRRVGSMVRELPPAQM 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,661,764
Number of Sequences: 37544
Number of extensions: 573531
Number of successful extensions: 1815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)