Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0075
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    35   9e-04
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.078
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 34.7 bits (76), Expect = 9e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 105 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCV 248
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCI 205


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.078
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 110 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 18
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 519 EWCYSRGPELGILACCRQPDLRPQLRHLITP 611
           E  Y  G  LG+ AC R   +   L+ + TP
Sbjct: 748 EILYKPGDHLGVFACNRSELVEAILKRVQTP 778


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 567  RQPDLRPQLRHLITPN 614
            R+PDLR +L ++  PN
Sbjct: 1635 RRPDLRDELGYIAPPN 1650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,594
Number of Sequences: 438
Number of extensions: 5255
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)