Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0075
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi... 30 1.8
At2g38630.1 68415.m04745 expressed protein 30 1.8
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem... 29 3.1
At5g39990.1 68418.m04849 glycosyltransferase family 14 protein /... 28 7.2
At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /... 28 7.2
At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m... 28 7.2
At3g42060.1 68416.m04315 myosin heavy chain-related 28 7.2
At3g21660.1 68416.m02731 UBX domain-containing protein contains ... 28 7.2
At3g12970.1 68416.m01616 expressed protein 27 9.6
>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein similar to
BRG1-binding protein ELD/OSA1 [Homo sapiens]
GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
DNA binding domain, PF01448: ELM2 domain, PF00249:
Myb-like DNA-binding domain
Length = 573
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 194 LRWLYRPQGVGDHCSSLCCRSITVV 268
LR+ RP + HCSS CC ++V
Sbjct: 307 LRYSIRPPNLSKHCSSSCCNGSSLV 331
>At2g38630.1 68415.m04745 expressed protein
Length = 467
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 227 DHCSSLCCRSITV-VIRAGVTNLTTPEYISESTEWYNYTTYDD 352
D+ SSL CRS + I G + P + SES +W + +DD
Sbjct: 153 DNYSSLKCRSTRIEYILRGQADAGFPLFESESLKWPGFVEFDD 195
>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA7)
identical to SP|O64806 Potential calcium-transporting
ATPase 7, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
similarity to SP|O81108 Calcium-transporting ATPase 2,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
2) {Arabidopsis thaliana}
Length = 1015
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 176 WIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFVDIFNEV 60
WI A+G + L GS NT I ++F +FNEV
Sbjct: 903 WILQAKGKSMFGLVGSDSTLVLNTLIFNCFVFCQVFNEV 941
>At5g39990.1 68418.m04849 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 447
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 69 EDINKDVDTTNLRIVSGWEATPGQHPHHAAL 161
E+ ++L +S W+ P QHPHH L
Sbjct: 325 EEFRNTTVNSDLHFIS-WDNPPKQHPHHLTL 354
>At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 434
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +3
Query: 96 TNLRIVSGWEATPGQHPHHAAL----RMVD 173
++L +S W+ P QHPHH L RMVD
Sbjct: 321 SDLHFIS-WDNPPKQHPHHLTLDDFQRMVD 349
>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
to SP|O81108 Calcium-transporting ATPase 2, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
{Arabidopsis thaliana}
Length = 1014
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 176 WIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFVDIFNEV 60
WI A+G + L G NT I ++F +FNE+
Sbjct: 902 WILQAKGKAMFGLDGPDSTLMLNTLIFNCFVFCQVFNEI 940
>At3g42060.1 68416.m04315 myosin heavy chain-related
Length = 712
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 60 YFIEDINKDVDTTNLRIVSGWEATPGQHPHHAA 158
+F + + VD TNL V+ W PG P H A
Sbjct: 301 FFAKLSDVSVDDTNLSCVNIWNFNPGFVPRHEA 333
>At3g21660.1 68416.m02731 UBX domain-containing protein contains
Pfam profile: PF00789 UBX domain
Length = 435
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 314 ESTEWY-NYTTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQSSADAFRNYDGLTV 490
E+TE + N + D +PN+ PND LLR P F +R++ +F +DG +
Sbjct: 7 ETTEKHLNEVSADAAKPNVPNPND-ELLR-RNPSSFPN----LRIKIPTSSFSTFDGSSG 60
Query: 491 YA 496
Y+
Sbjct: 61 YS 62
>At3g12970.1 68416.m01616 expressed protein
Length = 381
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 587 STSAPDYAECDLRRFFNVTSQSTCQGHSGGPSSRGSQVYD 706
S+S+P+ R F N +S+ST Q S P + S + +
Sbjct: 145 SSSSPNPKTASFRHFLNRSSKSTAQQPSHPPPGKDSDILE 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,222
Number of Sequences: 28952
Number of extensions: 402725
Number of successful extensions: 1116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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