Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0074
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 67 3e-12
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 31 0.20
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.81
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 28 1.4
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 27 1.9
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 26 4.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 26 5.7
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 5.7
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 25 10.0
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 10.0
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +1
Query: 265 VMVLGAGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVWRNRDVVVIPGD 444
+ V+GAGRGPLV A+ ++ V +IA+EKNP A +L + R+ W + V ++ GD
Sbjct: 348 IAVVGAGRGPLVDCALRAAISSSRTVDMIALEKNPNAFSMLLMRNRQDWAGK-VTLVFGD 406
Query: 445 MRQINLSPKADIIVSELLGS 504
MR N K DI+VSELLGS
Sbjct: 407 MRTWNPDYKIDILVSELLGS 426
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +2
Query: 11 PLQPLADNLDTHTYNVFEKDPVKYNQYQXAIAQALIDVQKDRAVKQIA 154
PLQPL+ NL+ TY +FE+DPVKY QY+ AI AL+D + + +V +IA
Sbjct: 303 PLQPLSYNLENITYEIFERDPVKYAQYEQAIFSALMD-RDESSVTRIA 349
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 504 LGDNELSPECLDGASNLL-KPAEYRFQAHIDSYVAPITSPRLWAAAK 641
+GDNELSPECLDG ++L + + SYV PI SP+LW+ A+
Sbjct: 427 MGDNELSPECLDGVQHVLDEETGICIPSSYISYVTPIMSPKLWSEAR 473
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 80 YNQYQXAIAQALIDVQKDRAVKQIAEYFQSKASCN-VASINQCSKNELCDNNTKELI 247
Y+QY ++L D++KD E F A+CN + +I +C K+ D K++I
Sbjct: 118 YDQYMLDCCRSLSDIEKDGVT---LEEFSCLANCNGLRTITKCVKDVSFDEFRKDVI 171
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.81
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 23 LADNLDTHTYNVFEKDP-VKYNQYQXAIAQALIDVQKDRAVKQIAEYFQSKASCNVASIN 199
L +LD+ +KDP V+ N+ + I LI + A IAE S+ +
Sbjct: 458 LLRSLDSLKAKTSKKDPIVRRNELKATIGPLLISLISKAAGDMIAESLASQVLVDALLYA 517
Query: 200 QCSKNELCDNNTK 238
C K E D K
Sbjct: 518 PCEKEEAVDATLK 530
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.9 bits (59), Expect = 1.4
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 235 ERVD*RCPITVMVLGAGRGPL-VRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVW 411
++ D + TV+ +G G G L VR A KVIAVE +P + +V+
Sbjct: 44 DKADLKQSDTVLEVGPGTGNLTVRMLEKAR-------KVIAVEMDPRMAAEITKRVQGTP 96
Query: 412 RNRDVVVIPGDMRQINLSPKADIIVS 489
+ + + V+ GD+ + +L P D+ VS
Sbjct: 97 KEKKLQVVLGDVIKTDL-PYFDVCVS 121
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 8 RPLQPLADNLDTHTYNVFEKDPVKYNQYQXAIAQALIDVQKDRAVKQIA 154
+PL L ++ Y+V E +P + + IAQALI + D +A
Sbjct: 70 KPLTILEPHILNLLYDVNEHEPESLDWFNVLIAQALIQFRYDACSNDVA 118
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 553 RFDAPSRHSGESSLSPKNLTIQKL*YQL 470
RF AP+ H G +SL + + +L Y+L
Sbjct: 386 RFTAPTAHYGYASLRSHQMPVDRLYYKL 413
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 280 AGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVWRNRDVVVIP 438
+G P AS + V++++ + NP V E + + VVVIP
Sbjct: 133 SGTLPFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 101 IAQALIDVQKDRAVKQ--IAEYFQSKASCNVASINQCSKNELCDNNTKEL 244
I ID+ K +Q + E+F K C+V S+ + ++ D K+L
Sbjct: 136 ILTTYIDLHKSHTERQKILLEHFGFKCYCSVCSVEERKIRKISDLRRKQL 185
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 633 QPITWETLWVQHTNRYELGIDI 568
+P+ + T WV ++N+Y LG +
Sbjct: 489 EPVLFITKWVDYSNKYGLGYQL 510
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 280 AGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVWRNRDVVVIP 438
+G P AS + V++++ + NP V E + + VVVIP
Sbjct: 133 SGTLPFTTTLAQASGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIP 185
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 276 KYHYSYRTSLINSFVLLSHNSFFEH 202
K H S SL NSFVLL+ N F+ H
Sbjct: 2969 KQHSSDTHSLANSFVLLA-NEFYIH 2992
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 348 YLNFGICYIGSIEC 307
Y+ FGIC +GS+ C
Sbjct: 68 YMLFGICLLGSLAC 81
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 544 APSRHSGESSLSPKNLTIQKL*YQLWVTSLFA 449
AP RHS E+S P + Q W+TSL A
Sbjct: 392 APGRHSAETSPDPVTIPPQ----PRWITSLAA 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,372
Number of Sequences: 5004
Number of extensions: 62132
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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