Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0074
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 60 1e-09
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 31 0.84
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 30 1.9
04_01_0004 - 90514-91143,91242-92111 30 1.9
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 29 3.4
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 5.9
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479... 28 7.8
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = +2
Query: 11 PLQPLADNLDTHTYNVFEKDPVKYNQYQXAIAQALIDVQKD 133
PLQPL DNL+ TY FEKD VKY QYQ AIA+AL+D D
Sbjct: 292 PLQPLMDNLEAQTYETFEKDTVKYTQYQRAIAKALVDRVSD 332
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 298 VRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVR-EVWRNRDVVVIPGDMRQINLSPKA 474
V T A++ T K+KV AVEKNP AV+ L + ++ E W + V +I DMR KA
Sbjct: 335 VSTTKTAAEETGRKLKVYAVEKNPNAVITLHSLIKLEGWESL-VTIISSDMRCWEAPEKA 393
Query: 475 DIIVSELLGSW 507
DI+VSELLGS+
Sbjct: 394 DILVSELLGSF 404
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 507 GDNELSPECLDGASNLLKPAEYRFQAHIDSYVAPITSPRL 626
GDNELSPECLDGA LKP + S++ PIT+ +L
Sbjct: 405 GDNELSPECLDGAQRFLKPDGISIPSSYTSFIEPITASKL 444
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 31.1 bits (67), Expect = 0.84
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 268 MVLGAGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVWRNRDVV----VI 435
+VL G G + A ++A KV AVE +A RE+ R DV VI
Sbjct: 70 VVLDVGTGSGILAIWSAQAGAR---KVYAVEATN-----MAEHARELARANDVADIVEVI 121
Query: 436 PGDMRQINLSPKADIIVSELLG 501
G M + L K D+I+SE +G
Sbjct: 122 QGSMEDVVLPEKVDVIISEWMG 143
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 385 LAAQVREVWR--NRD--VVVIPGDMRQINLSPKADIIVSELLG 501
+A Q RE+ + N D VVV+ G + + + K D+I+SE +G
Sbjct: 117 MATQAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMG 159
>04_01_0004 - 90514-91143,91242-92111
Length = 499
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 353 AITLTLVFVISEALNVALTRGPRPAPSTITVIGHL 249
A+ L +V V+ A+N R P+P+++ VIGHL
Sbjct: 5 ALALVVVVVVHVAVNAFGRRRLPPSPASLPVIGHL 39
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 424 VVVIPGDMRQINLSPKADIIVSELLGS 504
+ VI G + ++ L KADI++SE +G+
Sbjct: 258 ITVIKGKVEEVELPEKADILISEPMGT 284
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Frame = +2
Query: 98 AIAQALI-DVQKDRAVK-----QIAEYFQSKASCNVASINQCSKNELCDNNTKEL-IRDV 256
+I QAL D++K++A+ Q+ F+ + + +V ++ + + +LC +NT+ L +RD+
Sbjct: 730 SIVQALENDIEKEKALHKELTAQLEVKFEEEKARSVQTVKESMEAQLCSSNTEVLKLRDI 789
Query: 257 L 259
+
Sbjct: 790 V 790
>11_06_0640 +
25744048-25745021,25745128-25745273,25747870-25747945,
25747996-25748230
Length = 476
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 359 STAITLTLVFVISEALNVALTRGPRPAPSTITVIGHL*STLSYCCRIIHFL 207
+T I LTL+ ++ + + L+ G PAP + + L ST + C + F+
Sbjct: 62 ATLIMLTLLLALAMPILLWLSAGEAPAPLLVWRLSLLLSTYFFLCANVLFV 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,071
Number of Sequences: 37544
Number of extensions: 392254
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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