Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0074
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   7e-11
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                28   6.0  
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = +1

Query: 226 QQYERVD*RCPITV-MVLGAGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVR 402
           Q YE  + R P+ V MV+GAGRGPLVRA+  A++    +V++ AVEKNP AVV L     
Sbjct: 232 QTYEIFE-RDPVKVIMVVGAGRGPLVRASLTAAENAGRRVRLYAVEKNPNAVVTLETLKT 290

Query: 403 EVWRNRDVVVIPGDMRQ 453
           E W ++ V V+  DMR+
Sbjct: 291 EEWGDK-VTVVSSDMRE 306



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +2

Query: 11  PLQPLADNLDTHTYNVFEKDPVK 79
           PLQPL+DNL++ TY +FE+DPVK
Sbjct: 221 PLQPLSDNLESQTYEIFERDPVK 243


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = +1

Query: 268 MVLGAGRGPLVRATFNASDITNTKVKVIAVEKNPCAVVVLAAQVREVWRNRDVVVIPGDM 447
           +VL  G G  + + F A +      KV AVE +  A +     +++   +  + VI G +
Sbjct: 154 VVLDVGCGTGILSLFCARE--GKASKVYAVEASEIAKLTEEI-IKQNNLDDKITVIQGKI 210

Query: 448 RQINLSPKADIIVSELLGSWEIMSFRLNAWMEHR 549
            ++ L  K DIIVSE +G++ +  F L + +  R
Sbjct: 211 EEVELPEKVDIIVSEWMGTFLVFEFMLESVLTAR 244


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 62  EKDPVKYNQYQXAIAQALIDVQKDRAVKQIAEYFQSKASCNV-ASINQCSKNELCDNNTK 238
           E   VK+   Q  +     + ++D+A +++AE    K++ N+  SIN  + N   +NNT+
Sbjct: 144 ELKAVKWELEQARVQLHRTERERDQACRELAEVSGQKSAKNMETSINSNTNNNNNNNNTR 203

Query: 239 ELIRD 253
           E  +D
Sbjct: 204 ERSKD 208


>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 566 GISIPSSYRFVCCTHNVSQVMGCRENSTS 652
           GIS P  Y +V  + + SQ++GCR  S S
Sbjct: 54  GISRPGMYWYVRISVSSSQILGCRVGSRS 82


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 546 SNLLKPAEYRFQAHIDSYVAPITSP-RLWAAAKIALQGI 659
           ++ L+PA +  +A I SY+ P+ +P RL  A+ + L+GI
Sbjct: 71  TSTLEPANHLTEALIRSYLFPVITPERLENASALFLEGI 109


>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 536 QAFRRKLIISQEPNNSETIISALGDKFICLIS 441
           QAF+ +L  + +P N+ET +S+ G K + + S
Sbjct: 25  QAFQAQLSANNQPCNNETPVSSTGTKVVVIPS 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,738,651
Number of Sequences: 59808
Number of extensions: 451582
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)