Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0074
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
 Frame = +1

Query: 244 D*RCPITVMVLGAGRGPL-VRATFNASDITNT--------KVKVIAVEKNPCAVVVLAAQ 396
           D R  + + +LG GRGP+  +   +  +  NT        KVK+  VEKNP A+V L   
Sbjct: 403 DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYM 462

Query: 397 VREVWRNRDVVVIPGDMRQINLSPK------ADIIVSELLGSW 507
               W+ R V +I  DMR +    K       DIIVSELLGS+
Sbjct: 463 NVRTWKRR-VTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSF 504



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 11  PLQPLADNLDTHTYNVFEKDPVKYNQYQXAIAQALIDVQKD 133
           PLQPL++NLD+  YN FE+D +KY+ Y  A+  AL D+  D
Sbjct: 363 PLQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGAD 403



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/53 (47%), Positives = 28/53 (52%)
 Frame = +3

Query: 507 GDNELSPECLDGASNLLKPAEYRFQAHIDSYVAPITSPRLWAAAKIALQGIPH 665
           GDNELSPECLDG +  LKP          SYV PI S  +    K   Q IP+
Sbjct: 505 GDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIK--AQSIPY 555


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 430 QPHHDYARLLVPVQLTLLQHMDSSQ 356
           QP HDYA+L +P+  +LL+  D  Q
Sbjct: 118 QPKHDYAQLELPITESLLKRTDDEQ 142


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 386 NTTTAHGFFSTAITLTLVFVISEALNVALTRGPRPAPST 270
           N TT   FF+  I +T V VI   L++ + +   P P+T
Sbjct: 174 NKTTPDNFFNMNIAVTAVAVIPVILSLFINKSKPPTPAT 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,222
Number of Sequences: 27780
Number of extensions: 347330
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)