Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0073
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    28   1.5  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.9  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +1

Query: 130 KHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEQTRRLQTPNTRWIADQ*TT 309
           K + T +  K   KKE S  +      G ++      +  +   +L   N RWI +Q  T
Sbjct: 52  KSVTTNNSLKSEIKKEKSVPSIKEKNKGDAKHTKLTSLQQKMKDKLDGANFRWINEQLYT 111

Query: 310 MASRRTIELPNERRTLLRI 366
             S + +++  E   L  I
Sbjct: 112 TESDKAVQMFKENPDLFDI 130


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 100 EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 219
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 312 HSCLLISNPSSVWCLKSSCLLGVHEFRDDLSRMPGRIEV 196
           H CLL+  P   W L +     + + R+ ++ +PG I +
Sbjct: 261 HHCLLVLTPFQKWALSAPRTNILAQNREGIASLPGYIAI 299


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 139 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNA 249
           ++GH         ++   NHF+ +GH    +T  +N+
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNS 278


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 459  HRGCDLERDNATNEPSRSRYILD----VTPFQCLISNNGLVSPEL 581
            H   D +R N+TNEP R+++  D    +  ++CL S+N  +   L
Sbjct: 1165 HENKDSQR-NSTNEPVRNKFPSDDPAFILLYECLRSSNVQIDESL 1208


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 562  PLFEIRHWNGVTSKIYRLLLGS 497
            PLF ++ WN +TS  +    GS
Sbjct: 2155 PLFSMQRWNSITSMFFAHASGS 2176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,260
Number of Sequences: 5004
Number of extensions: 55514
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)