Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0073
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 31 0.67
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 31 0.89
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 30 2.0
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8) 29 4.7
SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48) 29 4.7
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92) 29 4.7
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7) 28 6.2
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 28 6.2
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 28 8.3
>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 85 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEQTR 261
E +FDEYDYYNFD +++ G+ K R+K+EA +TN F P GH RK++ K N E+ R
Sbjct: 2 EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNR 58
>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEQTRR 264
D+YD Y+FD H G K ++KKEAS++ N GHS RK + + E R+
Sbjct: 5 DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRK 58
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 124 HDKHIFTGHGGKQRTKKEASEHTNHFDP----SGHSRKIVTKLMNAEQTRRLQT 273
H I+T H +T + ++H N+ + H+ +I T L+N QT R+ T
Sbjct: 45 HAARIYTNHVNDSQTARIYTQHVNYSQTARIYTQHAARIYTNLVNDSQTARIYT 98
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 160 QRTKKEASEHTNHFDPSGH----SRKIVTKLMNAEQTRRLQTPNTRWIADQ*T 306
++TK++AS TN H SRK T ++TR+LQ TR DQ T
Sbjct: 119 RKTKRQASRKTNTSKRQDHYKHASRKTKTSQSQDQETRKLQDQKTRKPQDQKT 171
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 326 VLLLAIVVY*SAIHLVFGV*SLLVCS-AFMSFVTIFLEC-PDGSKWLVCSDASFLVRCLP 153
V +L I V+ S I L V S+++ S + + L C P S L CS +SFL+ C P
Sbjct: 1164 VTILFITVF-SVIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSP 1222
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 326 VLLLAIVVY*SAIHLVFGV*SLLV----CSAFMSFVTIFLECPDGSKWLVCSDASFLVRC 159
V++L I V+ S I L V S+++ CS SF L C S L CS +SFL+ C
Sbjct: 1174 VIILFITVF-SVIILFITVFSIIILLLPCSPSSSFS---LPCSPSSFLLPCSPSSFLLPC 1229
Query: 158 LP 153
P
Sbjct: 1230 SP 1231
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 73 VNMSEAFFDEYDYYNFDHDKHI 138
V+ +AF+ +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529
>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
Length = 420
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 73 VNMSEAFFDEYDYYNFDHDKHI 138
V+ +AF+ +DYY F HD ++
Sbjct: 66 VSEGKAFYGSFDYYQFPHDSNL 87
>SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)
Length = 294
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 281 VFGV*SLLVCSAFMSFVTIFLECPDGSKWLVCSDASFLVRCLP 153
+FG+ +LVC+AF F+T + C L FL+R +P
Sbjct: 80 LFGIFIILVCAAFGGFITTRVSCGVLPSLLGMLIVGFLLRNVP 122
>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
Length = 586
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2
Query: 532 VTSKIYRLLLGSFVALSRSKS 470
VTS IY L LGSF+AL R S
Sbjct: 256 VTSVIYALWLGSFLALGRQSS 276
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -3
Query: 318 ASHSCLLISNPSSVWCLKSSCLLGVHEFRDDLSRMPGRIEVV 193
A+ + L + SV L SSC HE R L R G IEVV
Sbjct: 21 ATANSALTTRRGSVQILGSSCTKSNHEVRKALPRTYGIIEVV 62
>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
Length = 706
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 70 NVNMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNA 249
+VN S+ + N HI+T H +T + ++H N + I T+ ++
Sbjct: 150 HVNDSQTARIYTQHVNDSQTAHIYTQHVSDSQTARIYTQHVN----DSQTAHIYTQHVSD 205
Query: 250 EQTRRLQTPNTRWIADQ 300
QT R+ T +T I Q
Sbjct: 206 SQTARIYTQHTARIYTQ 222
>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 263 DFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 397
+++ Q L G L QLW+ + SC ++ +CG + + L
Sbjct: 53 EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 310 MASRRTIELPNERRTLLRIPEEC 378
+ S RT +PN RTLL+IP C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483
>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 1633
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 121 DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEQTRRLQTPN 279
++ + I GG K + + T F P+ SRK KL +++ ++ L P+
Sbjct: 1294 ENSQTITRERGGDDNCKSSSLQRTEDFSPAQFSRKSPRKLTSSKGSQLLLRPS 1346
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,629,089
Number of Sequences: 59808
Number of extensions: 432282
Number of successful extensions: 1039
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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