Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0073
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.68 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   8.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   8.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 234 RDDLSRMPGRIEVVGVFRRFF--LGALLT 154
           +D+L + P RI   G+FRRF+  LG L T
Sbjct: 538 KDELGK-PSRISKQGLFRRFYNLLGKLST 565


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 354 RPPF-VWQLNSPSASHSC 304
           RP +  W+LN+ ++ H+C
Sbjct: 8   RPSYCTWELNATNSPHTC 25


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 67  AFGINIKYRNHNGNVVLTVSR 5
           A    + Y N NG+V+L  +R
Sbjct: 190 AIQFGVVYENKNGSVILDTAR 210


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -2

Query: 388 IHPNTPRVSAIASSFR 341
           IHP  PR+ ++ ++++
Sbjct: 160 IHPGDPRIKSVVTAYK 175


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 85  EAFFDEYDYYNFD 123
           E + D+YDY N D
Sbjct: 21  ELYSDKYDYVNID 33


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 85  EAFFDEYDYYNFD 123
           E + D+YDY N D
Sbjct: 21  ELYSDKYDYVNID 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,385
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)