Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0073
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29375.1 68416.m03690 XH domain-containing protein contains P...    28   5.1  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   6.8  
At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein ...    28   6.8  
At3g23190.1 68416.m02924 lesion inducing protein-related similar...    27   8.9  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   8.9  

>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
           profile: PF03469: XH domain
          Length = 335

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 172 KEASEHTNHFDPSGHSRKIVTKLMNAEQTR 261
           K A E  N F+PSG  R +V  L N+EQ R
Sbjct: 280 KTALEEVNEFNPSG--RHVVPTLWNSEQGR 307


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 321 SASHSCLLISNPSSVWCL 268
           SAS SCL + NP+S W +
Sbjct: 96  SASESCLAVKNPTSPWII 113


>At1g48430.1 68414.m05414 dihydroxyacetone kinase family protein
           similar to dihydroxyacetone kinases; contains Pfam
           profiles PF02733:  DAK1 domain, PF02734: DAK2 domain
          Length = 593

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 586 HSSSGLTSPLFEIRHWNGVTSKIYRLLLGSFVALSRSKSQPL*VGEVEILCEQKNA*DVP 407
           H S  L S +  +  + G T+  YR +L + +  S+   + L VGE  I     +A    
Sbjct: 482 HWSEALKSSISAVSKYGGATAG-YRTMLDALIPASKVLEEKLSVGEDPIAAFVLSAEAAT 540

Query: 406 SISETSIH 383
           + +E++IH
Sbjct: 541 AGAESTIH 548


>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 103 YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEQTRR 264
           YD+YN D+D+  FT    K    KE  E T   D  G +  + T ++N E  ++
Sbjct: 103 YDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-GGVAMSLYTSVVNEESRQK 152


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEQTRRLQ 270
           DH+K      G ++R K + S+H +H     HS+KI T     E+ RRL+
Sbjct: 96  DHEKGASKQVGRRERAKPDPSKH-HHRSHLPHSKKIET-----EEERRLR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,807
Number of Sequences: 28952
Number of extensions: 293291
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)