Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0071
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    27   1.7  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   7.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   9.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.2  

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 553 LKTFVRSFCAKFGLAKLRR 609
           L+ FV+ FC +FGL KL R
Sbjct: 20  LEEFVKPFCDRFGLTKLPR 38


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 6/31 (19%), Positives = 19/31 (61%)
 Frame = -2

Query: 164 RLNNILKHAYWTSLFLTSYKFGNSRYAVMCL 72
           ++ N++    W+++F+  ++    R+A+ C+
Sbjct: 31  KIRNVIGKGSWSTVFVVKHRQTKQRFALKCI 61


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 319 CY*FFLLLKMKSRLLT--TTFNMFVNLFHSLSHINKN 423
           C  F L  + + RL T  T FN+ + +   + HI+K+
Sbjct: 108 CNLFQLFKRRQGRLFTKETAFNILLQIISGIEHIHKH 144


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 531  CSYHHLVPKNVCAQLLREVRTRQVTSVVLYMLME 632
            C+ + L  ++VC + LRE  + ++  + +Y ++E
Sbjct: 1250 CNSNDLQMESVCMKFLREKLSHELKELTVYYMVE 1283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,415
Number of Sequences: 5004
Number of extensions: 48094
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)