Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0071
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0849 - 11768191-11771412                                         33   0.14 
10_08_0375 - 17326824-17326853,17326858-17327057,17327185-17327230     29   3.1  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     28   7.2  

>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -2

Query: 134 WTSLFLTSYKFGNSRYAVMCLTHTLALVSCSCRYLCLEYGRLQ 6
           W S F TS    N RY V  L + LA +      LC+E G LQ
Sbjct: 479 WRSFFETSGSSTNQRYRVPSLMNELASLVSKSECLCIEPGNLQ 521


>10_08_0375 - 17326824-17326853,17326858-17327057,17327185-17327230
          Length = 91

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
 Frame = +3

Query: 300 FNQENKVLLVFSFIKDEV---SFTN-DNIQYVCKSLSFIIS 410
           F+ +NKV+ +  F+ DE+   +F + DNI+  C+ L+ +I+
Sbjct: 14  FSVDNKVVFLLEFVPDEIRDNAFVSPDNIRRHCRGLAVLIT 54


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +2

Query: 497 SIPS*TSAPR-TLLIPPFGS*KRLCAASARSSDS----PSY 604
           S P   SAP  TLL PP+GS +  CA S   S S    PSY
Sbjct: 329 SSPQAQSAPHVTLLYPPYGSQQPACANSEPRSRSMAMQPSY 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,727
Number of Sequences: 37544
Number of extensions: 267401
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)