Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0071
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)              28   5.6  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.6  

>SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)
          Length = 146

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 SFIKDEVSFTNDNIQYVCKSLSFIISYKQKSINS 434
           SF+   +SF  +++ ++  SLSF++S     +NS
Sbjct: 35  SFVVSSLSFVVNSLSFIVNSLSFVVSSLSFVVNS 68



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 SFIKDEVSFTNDNIQYVCKSLSFIIS 410
           SFI + +SF   ++ +V  SLSF++S
Sbjct: 49  SFIVNSLSFVVSSLSFVVNSLSFVVS 74


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 SFIKDEVSFTNDNIQYVCKSLSFIISYKQKSINS 434
           SF+   +SF  +++ ++  SLSF++S     +NS
Sbjct: 380 SFVVSSLSFVVNSLSFIVNSLSFVVSSLSFVVNS 413



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 SFIKDEVSFTNDNIQYVCKSLSFIIS 410
           SFI + +SF   ++ +V  SLSF++S
Sbjct: 394 SFIVNSLSFVVSSLSFVVNSLSFVVS 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,354
Number of Sequences: 59808
Number of extensions: 334424
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)