Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0071
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15080.2 68415.m01719 disease resistance family protein conta...    29   3.4  
At2g15080.1 68415.m01718 disease resistance family protein conta...    29   3.4  
At5g27060.1 68418.m03229 disease resistance family protein conta...    28   4.5  
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2...    28   6.0  
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2...    28   6.0  
At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS cla...    27   7.9  

>At2g15080.2 68415.m01719 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 319 TLFSWLKDMI*LNISYLSTTTT 254
           T+FS LK +  LN+S+L+TTTT
Sbjct: 444 TIFSHLKSIEYLNLSHLNTTTT 465


>At2g15080.1 68415.m01718 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 319 TLFSWLKDMI*LNISYLSTTTT 254
           T+FS LK +  LN+S+L+TTTT
Sbjct: 444 TIFSHLKSIEYLNLSHLNTTTT 465


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -3

Query: 319 TLFSWLKDMI*LNISYLSTTT 257
           ++FS LK ++ LNIS+L+TTT
Sbjct: 429 SIFSHLKSLLDLNISHLNTTT 449


>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 342 KDEVSFTNDNIQYVCKSLSFIISY--KQKSINSKPIKID 452
           KDEV+ + DN    C +L  I+S   +QKS+N   I  D
Sbjct: 233 KDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSD 271


>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 342 KDEVSFTNDNIQYVCKSLSFIISY--KQKSINSKPIKID 452
           KDEV+ + DN    C +L  I+S   +QKS+N   I  D
Sbjct: 233 KDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSD 271


>At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 131 TSLFLTSYKFGNSRYAVMCLTHTLAL 54
           TS F +S KFG ++Y + CL +  AL
Sbjct: 383 TSRFKSSLKFGGAKYEMECLRYEEAL 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,439
Number of Sequences: 28952
Number of extensions: 230302
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)