Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0067
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         31   1.3  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    29   5.2  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   6.9  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 355 SIVTTAAPPFKPKRITASRQK*TGRWYLPARTHKG----PTTSNYANYNFAGYTF 203
           S+ + AAPPF P RIT+      GR +  +   K     PT S    +  AG TF
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARKDVPFFPTLSRGWPWLHAGSTF 219


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 267 RGLTKVLPPVITQIIILRVTLLLHDVIPSPWKSIVNI 157
           RGL KV   V++   +  +TL     I SPWK+ ++I
Sbjct: 179 RGLAKVAGTVVSFAGVTTMTLYKGTAISSPWKAPISI 215


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 315 RFGLKGGAAVVTILRSLNLYLKVGGAFKL*MSMGSSNHLIPG 440
           + G+ G   V+   R   + L +GG  +  ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,479,656
Number of Sequences: 37544
Number of extensions: 398469
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)