Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0067
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)                   29   5.3  

>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 327 SNRNALLLHGRNRQGDGTYPRGLTKVLPPVITQI 226
           S+ N+  L  +NR+G GTYP       P V+ ++
Sbjct: 724 SSDNSFSLEDKNREGPGTYPLRSGNAKPDVLAKL 757


>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
          Length = 248

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -1

Query: 381 P*DISSKISV*LQRLPHPSNRNALLLHGRNRQGDGTYPRGLTKVLPPVITQIIILRVTLL 202
           P  +++K++      P P      +     +    T+P   T VLP +I  + +  +TLL
Sbjct: 179 PTPVTAKVNADTSPTPTPVTAKVCVETAPPQVCVATFPPSRTLVLPSMIAIVHVNTITLL 238

Query: 201 LHDVIPSP 178
           + D+  SP
Sbjct: 239 IPDLTNSP 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,613,070
Number of Sequences: 59808
Number of extensions: 453781
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)