Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0067
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   3.5  
AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine re...    28   6.1  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA he...    28   8.1  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -3

Query: 490 HFFYFFIA*MGGRAHSPPGIKWLLEPMDIYNLNAP--PTLRYKF---KDLSIVTTAAPPF 326
           H F+F I  +     S PG+ +L   +D+Y L  P    +RY+F   KD + ++      
Sbjct: 28  HQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVPTDAPVRYEFERTKDFNSLSQGDLSL 87

Query: 325 KPKRITASRQK*TGRWYLP 269
            PKR         G  +LP
Sbjct: 88  TPKRNRREFDCEDGSCFLP 106


>AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine
           receptor, class i protein36 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 668 GITKTSLVIDFITVLKNLKLTMTSKSFTFY 579
           G   T   ID + +LK LK+ ++S S+T Y
Sbjct: 204 GTVLTYTTIDMLKILKKLKMKISSNSYTRY 233


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 445 SPPGIKWLLEPMDIYNLNAPPTLRYKFKDLSIVTTAAPP 329
           +P   K  + P  +    APPT+R      ++ TT APP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>Z54327-7|CAD57690.1|  268|Caenorhabditis elegans Hypothetical
           protein C26D10.2b protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 166 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 65
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 166 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 65
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 44  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 76


>U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA
           helicase protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 166 REHLLST*FIRKIGTRLGFEHRCIAQHECTGRLI 65
           R+ LL    +R IG   GFEH    QHEC  + I
Sbjct: 43  RDFLLKPEILRAIGD-CGFEHPSEVQHECIPQAI 75


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 622 FKTVIKSITKDVLVMPYSAVWSGCSLSASL 711
           FK ++  + KDVL+M  S VW+G  ++  L
Sbjct: 2   FKKLLHLLQKDVLLMRRSKVWTGFEVAIPL 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,192
Number of Sequences: 27780
Number of extensions: 345334
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)