Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0067
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16570.1 68417.m02508 protein arginine N-methyltransferase-re...    31   0.61 
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    29   2.5  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    28   5.7  
At4g37070.3 68417.m05251 patatin, putative similar to patatin-li...    27   10.0 
At4g37070.2 68417.m05249 patatin, putative similar to patatin-li...    27   10.0 
At4g37070.1 68417.m05250 patatin, putative similar to patatin-li...    27   10.0 

>At4g16570.1 68417.m02508 protein arginine
           N-methyltransferase-related contains weak similarity to
           protein arginine N-methyltransferase 2 (EC 2.1.1.-)
           (Swiss-Prot:P55345) [Homo sapiens]
          Length = 724

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
 Frame = +1

Query: 610 NLRFFK--TVIKSI-TKDVLVMPYSAVWSGCSL 699
           NLRF+K  T++ S+ ++D +VMPY  V  GC++
Sbjct: 533 NLRFWKDRTLLDSVLSEDAVVMPYKGVLRGCAM 565


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -1

Query: 315 ALLLHGRNRQGDG--TYPRGLTKVLPPVITQIIILRVTLLLHDVIPSPWKSIVNIC*VRN 142
           ALL++ +NR  +   T PRG+T+++  ++ + +I    LLL   +    + I  I     
Sbjct: 151 ALLMNSQNRLQEAILTTPRGITRLMDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEG 210

Query: 141 SLEKLVPAWDSNTGASLNTNAPDVLSL 61
           + EK+        G+  +    D L L
Sbjct: 211 AFEKIFSIIKEEGGSDGDVVVQDCLEL 237


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 321 GLKGGAAVVTILRSLNLYLKVGGAFKL*MSMGSSNHLIPG 440
           G+     V+ + RS  + L +GG  +  ++MG S HL  G
Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At4g37070.3 68417.m05251 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 372

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 403 YNLNAPPTLRYKFKDLSIVTTAAPPFKP 320
           Y L   P+L  K  D+ I T+AAP F P
Sbjct: 157 YQLLVDPSLDVKVSDICIGTSAAPTFFP 184


>At4g37070.2 68417.m05249 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 414

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 403 YNLNAPPTLRYKFKDLSIVTTAAPPFKP 320
           Y L   P+L  K  D+ I T+AAP F P
Sbjct: 168 YQLLVDPSLDVKVSDICIGTSAAPTFFP 195


>At4g37070.1 68417.m05250 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 383

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 403 YNLNAPPTLRYKFKDLSIVTTAAPPFKP 320
           Y L   P+L  K  D+ I T+AAP F P
Sbjct: 168 YQLLVDPSLDVKVSDICIGTSAAPTFFP 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,135
Number of Sequences: 28952
Number of extensions: 315433
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)