Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.1  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   7.2  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   7.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.6  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   9.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 545 QYYSILIIKHFHYSH 501
           ++YS  I+ HF Y+H
Sbjct: 89  RFYSTPIVPHFAYNH 103


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + ++ ++ + K FH++HY
Sbjct: 13  YTRFQTLELEKEFHFNHY 30


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + ++ ++ + K FH++HY
Sbjct: 164 YTRFQTLELEKEFHFNHY 181


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + ++ ++ + K FH++HY
Sbjct: 223 YTRFQTLELEKEFHFNHY 240


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 113 GKSLSIPKSFLDTLVS 160
           GKSLSIP+  L+   S
Sbjct: 16  GKSLSIPQQILNEFKS 31


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + +Y ++ + K FH +HY
Sbjct: 230 YTRYQTLELEKEFHTNHY 247


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + +Y ++ + K FH +HY
Sbjct: 12  YTRYQTLELEKEFHTNHY 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,746
Number of Sequences: 336
Number of extensions: 2734
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)