Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    29   0.62 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   0.82 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   1.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   1.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 557 IFHVQYYSILIIKHFHYSHYEQYFSQDKRRH 465
           +F   + ++LI+K F YSH+  Y S+ +  H
Sbjct: 205 VFFTLHCAVLIMKQFSYSHHMGYISEIRILH 235


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 301 SGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEESEK 435
           S   +L+S + H  +   S+T+QR     QEI+   ++   + EK
Sbjct: 397 SAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEKLEAKYNSKEEK 441


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 89  NFLTNDLIGKSLSIPK-SFLD--TLVSCHVIFPNR 184
           +F T D+IG  +S+PK SF    TL SCH   P R
Sbjct: 450 SFGTGDIIGLHISLPKPSFAQHTTLPSCHDRIPIR 484


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 268 AIGFRGAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEE 426
           A+   G A + +GT++ + L++H  D  R++     H T  +I+ R+   + E
Sbjct: 26  AVDLNGNAFAPNGTFQKKDLISHKNDFERTMRHDVLH-TNPKIEVRSETHIYE 77


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 107 LIGKSLSIPKSFLDTLVSCHVIFPNRVMYEAFPNNNLPAGNIFFLEAVQPSPA 265
           L+ +S S PKS   T        PNR+  E    N L A         +P P+
Sbjct: 411 LVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTASKEQIASPKRPGPS 463


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 4   QILVFVCSCSGYCSSFGRNRDHHTRHI 84
           ++L FVCSC    S +   R H+ R I
Sbjct: 171 RLLEFVCSCRLPASKYDHPRSHYIRRI 197


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 68  TIPDISFNFLTNDLIGKSLSIPKSFLDTLVS 160
           T P   F+ +  D  GK  ++P + LDT ++
Sbjct: 438 TFPKPKFSDILRDYWGKKANLPTALLDTSIN 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,050
Number of Sequences: 5004
Number of extensions: 45994
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)