Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093879-1|AAH93879.1|  818|Homo sapiens protocadherin gamma sub...    31   3.7  
BC093877-1|AAH93877.1|  818|Homo sapiens protocadherin gamma sub...    31   3.7  
AF152521-1|AAD43781.1|  818|Homo sapiens protocadherin gamma B5 ...    31   3.7  
AF152334-1|AAD43728.1|  923|Homo sapiens protocadherin gamma B5 ...    31   3.7  
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i...    29   8.5  
AB033020-1|BAA86508.1|  575|Homo sapiens KIAA1194 protein protein.     29   8.5  

>BC093879-1|AAH93879.1|  818|Homo sapiens protocadherin gamma
           subfamily B, 5 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 283 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 429
           G    LSGT ELR  VT   DN     R  + ++L+E  P  + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265


>BC093877-1|AAH93877.1|  818|Homo sapiens protocadherin gamma
           subfamily B, 5 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 283 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 429
           G    LSGT ELR  VT   DN     R  + ++L+E  P  + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265


>AF152521-1|AAD43781.1|  818|Homo sapiens protocadherin gamma B5
           short form protein protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 283 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 429
           G    LSGT ELR  VT   DN     R  + ++L+E  P  + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265


>AF152334-1|AAD43728.1|  923|Homo sapiens protocadherin gamma B5
           protein.
          Length = 923

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 283 GAAVSLSGTYELRSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEES 429
           G    LSGT ELR  VT   DN     R  + ++L+E  P  + +++ S
Sbjct: 217 GGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVS 265


>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
           interacting protein splice variant a protein.
          Length = 2161

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 250 NCFQEEYITGRQIVVRESFVHYTVREYDMARYQSVQEGLGDGQGF 116
           N  QE     R    +  F HYTV  YD     S+ +G+G G  +
Sbjct: 613 NRSQESKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDY 657


>AB033020-1|BAA86508.1|  575|Homo sapiens KIAA1194 protein protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/60 (21%), Positives = 32/60 (53%)
 Frame = +1

Query: 319 RSLVTHVADNSRSLTRQRFHLTLQEIKPRNSQIVEESEKA*ANGIFLIRCLLLSCEKYCS 498
           R L+ ++ DN     ++   +T ++  PR+  +++E ++     +F + C  + C+KY +
Sbjct: 165 RRLLNYLLDNLSGTAKR---ITTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYAT 221


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,646,178
Number of Sequences: 237096
Number of extensions: 1604339
Number of successful extensions: 3259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3259
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)