Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.098
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.098
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 VIYSSWKQFNLHQLCDWFPWSCCIFERN 308
           +I S  KQ  L+++ +WF  + C F RN
Sbjct: 517 IIESPDKQLTLNEIYNWFQNTFCYFRRN 544


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 551 HVQYYSILIIKHFHYSHY 498
           + ++ ++ + K FHY+HY
Sbjct: 15  YTRFQTLELEKEFHYNHY 32


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 545 QYYSILIIKHFHYSHYEQY 489
           QY SIL+I+H    H   Y
Sbjct: 665 QYNSILMIEHLSPDHNGNY 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,849
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)