Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0065
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    29   0.91 
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.5  

>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 444 RVFLLICSDGELPFKAAVYLTAPPQARTHCDQ-QRKLQGTVQ 566
           RVF+++  +GE P     + T  P AR +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 700 PKDTMPTSAFWKKAGHPSQYCRSRGHQPGPNRRRICYQSRRDH 572
           P  +   S +  K+ H S+Y R+R   PG N      QS   H
Sbjct: 195 PSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 383  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGKIQR*ATVCRIV 234
            W +LLV  +  C NS   +R+G  Q   +IF+           A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLV 1073


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,406
Number of Sequences: 5004
Number of extensions: 72470
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)