Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0065
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1002 - 26826316-26826522                                         31   0.95 
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   2.2  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   2.2  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    29   2.9  
08_01_0220 - 1751367-1752854                                           29   5.1  
05_03_0586 + 15782645-15782721,15782781-15783405                       29   5.1  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   8.9  

>06_03_1002 - 26826316-26826522
          Length = 68

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 599 SAPVWSGLVAATTTILTWVPCLLPKCASRHRIF 697
           S P   G VAAT     WV C LP C +  R F
Sbjct: 18  SCPYCGGGVAATDVEAKWVLCFLPLCLNNKRRF 50


>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 207 LKGSGSW*EQYQRTVGTIDSRWV 139
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 207 LKGSGSW*EQYQRTVGTIDSRWV 139
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 669  GRRQGTQVSIVVVAATSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFELVEVPSDTLP 490
            G     Q     + ++  D T ++F   H+ + + V+ P      +NE  +VE+PS  + 
Sbjct: 1965 GHGNAKQTETETIYSSVDDSTSSDFSSVHNLVRSTVVAPCYSSSKNNERIIVELPSLMVR 2024

Query: 489  P*TVV 475
            P  VV
Sbjct: 2025 PFKVV 2029


>08_01_0220 - 1751367-1752854
          Length = 495

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 360 ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLICSDGELPFKAAVYLTAPPQA 521
           A+++   PS +A+    +L+S  +  Y   FLL+  +   P +AAV L A P A
Sbjct: 2   ATHQRRHPSVAAELEGTLLISGDLFPY---FLLVALEAGGPLRAAVLLAAYPVA 52


>05_03_0586 + 15782645-15782721,15782781-15783405
          Length = 233

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 682 TSAFWKKAGHPSQYCRSRGHQPGPNR 605
           +SA WK  GH  Q C   GH PG  R
Sbjct: 148 SSACWKAVGHDDQQC---GHCPGQRR 170


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 453
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,421,428
Number of Sequences: 37544
Number of extensions: 530068
Number of successful extensions: 1491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)