Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0065
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.49
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 1.1
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.0
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.0
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 3.4
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 3.4
AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical... 29 3.4
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 355 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 456
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 355 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 450
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 379 CHPLRPKHPAGCYYPTRCRNTPG 447
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical
protein T08G3.2 protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 114 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRLSLDLPVAVSPVK 293
S V + ++LP+LN F GI L + F + YRR D+ ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325
Query: 294 YLMFTLLLTIPNSLRRI 344
+ + L+ IP + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 133 YSYPS*INGSNSALVLFSPTTTTFQLL 213
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 658 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 557
GH RGH P P R R Y + HDPC V
Sbjct: 222 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 658 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 557
GH RGH P P R R Y + HDPC V
Sbjct: 341 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>AF077537-12|AAC26281.1| 346|Caenorhabditis elegans Hypothetical
protein F16G10.14 protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 245 IPSLIAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 367
IPS +A PGEI+ +V+ PE SEE +V+++
Sbjct: 31 IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -2
Query: 224 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 45
+E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H
Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963
Query: 44 SY 39
Y
Sbjct: 964 DY 965
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = -3
Query: 670 WKKAGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRACGGAVRYT 494
W + +++C + P ICY S+RD T C C+ +
Sbjct: 375 WLQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGC 434
Query: 493 AALNGSSPSEQINKNTLGYY---DTLLDNSTLL 404
+++N +P E+ LGYY D L N LL
Sbjct: 435 SSVNDEAPEEEKRLGKLGYYTYCDENLCNGDLL 467
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,298,131
Number of Sequences: 27780
Number of extensions: 423937
Number of successful extensions: 1137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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