Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0065
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   1.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 397 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 284
           W +  G C S   HI++V L  EFG++ + K++  ++ G
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 423 WIIAPCWMFGPKWMACVTRTMLTSL 349
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 423 WIIAPCWMFGPKWMACVTRTMLTSL 349
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 423 WIIAPCWMFGPKWMACVTRTMLTSL 349
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 370 SNTCHPLRPKHPAGCYYPTRCRNTPGYF 453
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 192 YHYLSTATCFHGEFYD-PAYRRLSLDLPVAVSPVKYLMFTLLLTIPN 329
           + +LS+    + + Y+ P Y +++LD  V   P+   M+    TIPN
Sbjct: 621 FFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAWNFTIPN 667


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 192 YHYLSTATCFHGEFYD-PAYRRLSLDLPVAVSPVKYLMFTLLLTIPN 329
           + +LS+    + + Y+ P Y +++LD  V   P+   M+    TIPN
Sbjct: 621 FFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAWNFTIPN 667


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 207 LKGSGSW*EQYQRTVGTIDSR 145
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/72 (19%), Positives = 28/72 (38%)
 Frame = -1

Query: 567 LVLFPAVFFVGHNEFELVEVPSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWMFGPK 388
           +V+F  V F+ H + + V   + + P    + +PS   ++P      C       + G  
Sbjct: 384 IVIFSVVGFMAHEQQKPVADVAASGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILIGLD 443

Query: 387 WMACVTRTMLTS 352
              C     +T+
Sbjct: 444 SQFCTVEGFITA 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,177
Number of Sequences: 438
Number of extensions: 5344
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)