Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0065
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56450.1 68418.m07046 mitochondrial substrate carrier family ... 38 0.007
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.46
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.46
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.4
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.4
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.4
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote... 28 5.6
At2g47820.1 68415.m05968 expressed protein 28 5.6
At1g11220.1 68414.m01285 expressed protein contains similarity t... 28 7.4
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein... 28 7.4
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 27 9.8
At4g33600.1 68417.m04773 expressed protein 27 9.8
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 27 9.8
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 27 9.8
>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 330
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -3
Query: 727 GVDVIGMLFPKDTMPTSAFWKKAGHPSQYCRSRGHQPGP---NRRRICYQSRRDHDPCTV 557
G D + +F +DT P A WK+ G S G P RRRI QS +H
Sbjct: 221 GFDTVKEIFSEDTKPELALWKRWGLAQAVTTSAGLASYPLDTVRRRIMMQSGMEHP--MY 278
Query: 556 PCSFLCWSQ*VRACGGAVRYTAALN 482
+ CW + R+ G A Y AL+
Sbjct: 279 RSTLDCWKKIYRSEGLASFYRGALS 303
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 451 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 347
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 451 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 347
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 207 LKGSGSW*EQYQRTVGTIDSRWV 139
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 207 LKGSGSW*EQYQRTVGTIDSRWV 139
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 207 LKGSGSW*EQYQRTVGTIDSRWV 139
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21, Oryza sativa,
PIR:A57676
Length = 1031
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +3
Query: 204 STATCFHGEFYDPAYRRLSLDLPVAVSPVKYLMFTLLL-------TIPNSLRRITTRM*A 362
+ A C E+ D Y RL +LP +++ + + +L L TIP+ + + +
Sbjct: 339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398
Query: 363 SYE*HMPSTSAQTSSRVLLSNKV 431
S E +M S S LL+ +V
Sbjct: 399 SLETNMLSGELPVSFGKLLNLQV 421
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 138 LPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRLSLDLPV 275
LP + +Q ++LT L TCFH E P + L+ LP+
Sbjct: 36 LPRVGDQYQADLPVLLTESDRLKLITCFHSE--PPLQKLLTFGLPI 79
>At1g11220.1 68414.m01285 expressed protein contains similarity to
cotton fiber expressed protein 1 [Gossypium hirsutum]
gi|3264828|gb|AAC33276
Length = 310
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 572 MIAS*LITNSAPVWSGLVAATTTILTWVPCLLPKCASRHRIFWKEHANDIYPVVL 736
M++S + +A + +G+VA + + + VP + SR IFW + + P L
Sbjct: 1 MVSSMISIKAALITAGIVAVSLFLKSSVPIAVDFSVSRFPIFWSSFLSWLKPPYL 55
>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 579
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 679 SAFWKKAGHPSQYCRSRGHQPGPNRRRICYQSRRD 575
S FWKK G R RG++ +R+ RD
Sbjct: 85 SGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRD 119
>At5g07660.1 68418.m00877 structural maintenance of chromosomes (SMC)
family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -1
Query: 279 LRREDPAISDGMQDRRILHGNR*QLKGS-----GSW*EQYQRTVGTIDSRW 142
L+RE+ S+ + D RI+HG + Q G S E+ + +DSRW
Sbjct: 863 LKRENENYSESIDDLRIMHGEKEQKIGKKRKTYKSCREKLKVCKDAVDSRW 913
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 146 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 238
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 475 NYRSRRQCI*RHL--HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTD 648
+YR R+ + RHL HK +L KENC+ ++ V + RD DNT
Sbjct: 104 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 159
Query: 649 LG 654
LG
Sbjct: 160 LG 161
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 475 NYRSRRQCI*RHL--HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTD 648
+YR R+ + RHL HK +L KENC+ ++ V + RD DNT
Sbjct: 16 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 71
Query: 649 LG 654
LG
Sbjct: 72 LG 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,567
Number of Sequences: 28952
Number of extensions: 394833
Number of successful extensions: 1059
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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