Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0064
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   2.0  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   2.0  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   2.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    23   6.1  
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28...    23   6.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    23   6.1  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.0  
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    23   8.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    23   8.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    23   8.0  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 89  RRWLASWCD--CHEPLGTGNSSMVGG 18
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 14/61 (22%), Positives = 24/61 (39%)
 Frame = +1

Query: 4   ESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYLNYSP 183
           +S F+  T D      GS     +   +  N++    +          K SG++YL+  P
Sbjct: 71  DSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYLSRIP 130

Query: 184 P 186
           P
Sbjct: 131 P 131


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 29  WMNYQCPKAHGSRT 70
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 141 RCKNIRTGLPQLLASQ 188
           RCK + + LPQLL S+
Sbjct: 91  RCKKVESMLPQLLNSE 106


>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 185 PSPWIKHSLITKAW 226
           P  W KH +I +AW
Sbjct: 40  PDMWEKHEVINRAW 53


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 146 QKHQDWSTSTTRLPSPWIKHSLITKAW 226
           Q +    T T  L S WI   LI KAW
Sbjct: 377 QIYDSTKTLTWALASQWIGVYLIPKAW 403


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 5   KVTSSPPPWMNYQCPKAHGSRTMMP 79
           K  +SP PW N Q   + G     P
Sbjct: 152 KRKNSPDPWANLQTKPSFGETVQAP 176


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 13  FKPPTMDELPVPKGSWQSHHDANQRRFNAVL 105
           +K  T DE+   K   Q   DA ++RF   L
Sbjct: 82  YKALTADEIQKYKNKLQEQFDAEKKRFMETL 112


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 96   CCAPLWNCIHC 128
            CCA   NC++C
Sbjct: 1565 CCASFANCVYC 1575


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 96   CCAPLWNCIHC 128
            CCA   NC++C
Sbjct: 1565 CCASFANCVYC 1575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,031,791
Number of Sequences: 5004
Number of extensions: 14345
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)