Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0064
(278 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20) 27 3.1
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 26 4.1
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_58646| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 26 4.1
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8) 26 5.4
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 26 5.4
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 26 5.4
SB_33100| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17) 25 9.4
>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
+H +P T+DEL P+G+WQS + +RR
Sbjct: 849 NHTRPDLNTLDELK-PEGAWQSGTELTERR 877
>SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20)
Length = 337
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 13 FKPPTMDELPVPKGSWQSHHDANQR 87
F+ PT+ EL V SW HH N+R
Sbjct: 306 FEKPTLAELKV---SWTKHHHGNRR 327
>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
Length = 740
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
SH +P T+DE P+G+WQS D +RR
Sbjct: 456 SHPRPDLNTLDESK-PEGAWQSGTDLTERR 484
>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
SH +P T+DE P+G+WQS D +RR
Sbjct: 494 SHPRPDLNTLDESE-PEGAWQSGTDLTERR 522
>SB_58646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 110 KRSTALKRRWLASWCDCHEPLGTGNSSMV 24
K S A+KR W A W H+ N S V
Sbjct: 33 KNSMAIKRSWRACWIRQHKIFRVDNCSKV 61
>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
SH +P T+DE P+G+WQS D +RR
Sbjct: 303 SHPRPDLNTLDESK-PEGAWQSGTDLTERR 331
>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
Length = 671
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
SH +P T+DE P+G+WQS D +RR
Sbjct: 375 SHPRPDLNTLDESK-PEGAWQSGTDLTERR 403
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 SHFKPP--TMDELPVPKGSWQSHHDANQRR 90
SH +P T+DE P+G+WQS D +RR
Sbjct: 591 SHPRPDLNTLDESK-PEGAWQSGTDLTERR 619
>SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8)
Length = 597
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 25 TMDELPVPKGSWQSHHDAN 81
T+D P+P SW +H +N
Sbjct: 433 TLDPWPIPARSWSVYHSSN 451
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 25 TMDELPVPKGSWQSHHDANQRR 90
T+DEL P+G+WQS + +RR
Sbjct: 701 TLDELK-PEGAWQSGTELTERR 721
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 25 TMDELPVPKGSWQSHHDANQRR 90
T+DEL P+G+WQS + +RR
Sbjct: 581 TLDELK-PEGAWQSGTELTERR 601
>SB_33100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 25 TMDELPVPKGSWQSHHDANQRR 90
T+DE P+G+WQS D +RR
Sbjct: 123 TLDESK-PEGAWQSATDLTERR 143
>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 1693
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 25 TMDELPVPKGSWQSHHDANQRR 90
T+DE P+G+WQS D +RR
Sbjct: 1254 TLDESK-PEGAWQSGTDLTERR 1274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,786,741
Number of Sequences: 59808
Number of extensions: 106598
Number of successful extensions: 363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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