Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0064
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   0.65 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   0.65 
U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory recep...    25   6.1  
AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative chem...    25   6.1  
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 75   CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 197
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 75   CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 197
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory receptor
           family protein 2 protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +1

Query: 19  PPTMDELPVPKGSWQSHHDAN---QRRFN 96
           P   DE P+P+ S Q  HD     QR FN
Sbjct: 252 PAEQDECPLPESSLQKIHDCQISYQRIFN 280


>AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative
           chemoreceptor GUR-2 protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +1

Query: 19  PPTMDELPVPKGSWQSHHDAN---QRRFN 96
           P   DE P+P+ S Q  HD     QR FN
Sbjct: 240 PAEQDECPLPESSLQKIHDCQISYQRIFN 268


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   AKVTSSPPPWMNYQCPKAHGSR 67
           A V S+PPP+ N+Q    +G R
Sbjct: 251 APVYSAPPPYNNFQQNSPYGGR 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,840,718
Number of Sequences: 27780
Number of extensions: 85872
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)