Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0063
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   2.4  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    27   4.2  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   9.7  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.7  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 20  FLFKIK*K*NQPLKLSYLKEINAKIIINTHEMNQHKIYINLENIYHVEYKN 172
           F F+I       LKL+  +EIN  II  THE+ Q +I     N + +  +N
Sbjct: 58  FSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQLEIEPVTSNDWEIAERN 108


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 424 IINHNHVGFTNNIQRINLASGSNNFAGTWPGLPASE 531
           ++N  HV   N++Q +   S +   AG W G    E
Sbjct: 238 MMNQTHVKAINHLQEVVRVSEAQTLAGEWTGYAKRE 273


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 430 NHNHVGFTNNIQRINLASGSNNFAGTWPG 516
           +H+ +G    I + +++SGS +F  +W G
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDG 269


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 739 SVDASAAADVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTW 575
           S D+ +++D      S  +  R  EP+++   A IT       +T  V   RL+W
Sbjct: 218 SGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSW 272


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 641 NDHIVSKRAGADGVGNDLEAHLAFL-LVVGSRSSIGGPSEAGSPGQVPAKLLLPLARLMR 465
           ND +     G+ G G  L A    L ++VG R       +A   G VP K L P+   ++
Sbjct: 84  NDTLAIIGYGSQGHGQGLNARDQGLNVIVGVRKDGASWKQAIEDGWVPGKTLFPVEEAIK 143


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 98   INTHEMNQHKIYINLENIYHVEYKNISINYN 190
            +NT    + K   NL NI++ EY N SI  N
Sbjct: 1201 LNTSRGFETKYLYNLMNIWNPEYTNDSIKSN 1231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,583
Number of Sequences: 5004
Number of extensions: 50649
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)