Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0062
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    28   1.6  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   3.7  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   4.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   4.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.5  

>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 532 DSYNYLKIDSVLTLGNRPYKERMTLWDLFYKLNEKKQ 642
           DSYN+ ++ ++L  G R Y E   +W      NE  Q
Sbjct: 73  DSYNFDRLQTILRKGTRVYVEADAVWRSVPAGNEGSQ 109


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 84  LNKTFNFDSDTLEEMTQYVRQFYIGDDPITEEKRWEIINYDSDFVYIHPIQRTINKFLK 260
           L  +F+   D  + + ++VR     +D IT  K W  I  +SD +  H I+    +  K
Sbjct: 455 LKNSFDGSRDLQKSLIEHVRTLRRIEDEITLTKMWISIAKESDAMSGHNIKSVETRLAK 513


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 42  DAQHFASLDIFTTYLNKTFNFDSDTLEEMTQYVRQFYIGDDPITEEKRWEIINYDS 209
           DA+ F S D + +   +  N + D  EEM      + IG+D + E+ +  II++ S
Sbjct: 528 DAEEFPSED-YESRQPRRSN-EEDREEEMNPGDETYLIGEDLVVEDSQGNIISHTS 581


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   DHELMITHVLGDAQHFASLDIFTTYLNKTFN-FDSDTLEEMTQYVRQFYIGDDPITEEKR 185
           D  ++ T V   A  F    I  + +++  + +    L +M+Q V+ FY  +DP+ + ++
Sbjct: 481 DSVILATEVNEKAPRFYRRFILRSLVDRLKSLYPKLALSQMSQLVKNFYAFEDPLLQIEK 540

Query: 186 WEIIN 200
             ++N
Sbjct: 541 SLVLN 545


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 209  RFCLHSSHSKDYQ*IFEGH 265
            R  +H S  KDYQ + +GH
Sbjct: 1970 RLTIHGSDGKDYQYVLKGH 1988


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 57  ASLDIFT--TYLNKTFNFDSDTLEEMTQYVRQFYIGDDPITEEK-RWEIINYDSD 212
           A  +IFT  ++     NF ++ L++   +   F +  +  T+E+  W+ I+Y +D
Sbjct: 460 AGFEIFTFNSFEQLCINFTNEKLQQFFNHY-MFVLEQEEYTQERIEWDFIDYGND 513


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 459 TSPNSATPLQKPLSYYHQMGSNNE 530
           T+P S+TPLQ P    +++ S +E
Sbjct: 84  TAPTSSTPLQSPDESVNKLNSEDE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,350
Number of Sequences: 5004
Number of extensions: 66354
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)