Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0062
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           30   2.2  
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626...    28   6.7  
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510...    28   8.8  

>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 QFYIGDDPITEEKRWEIINYDSDFVYIH 227
           Q Y+  + I  +K  E+IN D DFV++H
Sbjct: 180 QSYVSANKIFADKVLEVINPDDDFVWVH 207


>05_05_0125 -
           22561972-22562028,22562318-22562416,22562496-22562624,
           22563312-22563355,22563570-22563642,22563791-22563877,
           22563985-22564069,22565460-22565533,22565612-22566192,
           22566275-22568270
          Length = 1074

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 568 TLGNRPYKERMTLWDLFYKLNEKKQKYYDESNEDSF 675
           +LG  P   R  LW++ ++++   Q+   +S+ED F
Sbjct: 761 SLGLSPSSRRWRLWNIPFRISRSLQRSNSDSSEDIF 796


>10_08_0827 +
           20849312-20849833,20850352-20850417,20850786-20851082,
           20851215-20851412,20851748-20851849,20851960-20852100,
           20852171-20852278,20852588-20852670,20852829-20852991,
           20853636-20853650,20853968-20854093
          Length = 606

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 346 RCINTTTHFYQIPPTVIREHVIVNITSMSFK 254
           RCIN +   Y  PP +IR  ++ ++   ++K
Sbjct: 429 RCINESMRLYPHPPVLIRRAIVDDVLPGNYK 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,536
Number of Sequences: 37544
Number of extensions: 384037
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)