Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0062
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  42   4e-04
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  33   0.32 
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.73 
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)                   31   1.3  
SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)                  28   6.8  
SB_4735| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_54313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_38487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +2

Query: 347 GVAHADELGYIFSIKSLSNKTSPEDQLMVDR-MTTMWTNFAKFGDPTP 487
           G AHAD+L ++F     S + S +++L + + M T+WTNFAK+G+PTP
Sbjct: 488 GAAHADDLRFLFRN---STQASHKEELDISQAMVTLWTNFAKYGNPTP 532


>SB_11959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +2

Query: 356 HADELGYIFSIKSLSNKTSPEDQLMVDRMTTMWTNFAKFGDP 481
           HA EL ++F    LSN ++P D      +  +WTNFAK GDP
Sbjct: 262 HASELMFVFGFPLLSNASNPVDANFSRDVIQLWTNFAKTGDP 303


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 347 GVAHADELGYIFSIKSLSNKT---SPEDQLMVDRMTTMWTNFAKFGDPTP 487
           GV H D   Y F +  LS +      +D+ + D + TM+ NFAK+G+PTP
Sbjct: 449 GVVHGDTTAYKFGVPLLSAQQHIYDEQDRNVSDMLVTMFVNFAKYGNPTP 498


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 347 GVAHADELGYIFSIK--SLSNKTSPEDQLMVDR-----MTTMWTNFAKFGDPTPE 490
           GV H D+  Y F      L    + ++   VDR     + T +TNFAK G PTPE
Sbjct: 450 GVGHKDDTPYEFGFPFLDLDKALTQQEYDDVDRNVSNYIITFFTNFAKTGHPTPE 504


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +2

Query: 263 HARNIYYYMFSYDGGRNLVKVSRGINAPGVAHADELGYIFSIKSLSNKT----SPEDQLM 430
           H+     Y+F Y        +S         H+    Y F    + N T    + ED+ +
Sbjct: 500 HSEYSATYLFEYS------HISNNSRLKWATHSSNADYTFGAP-IHNATHIAYTKEDRNV 552

Query: 431 VDRMTTMWTNFAKFGDPTPETTE 499
              +  +++NF KFGDPTP+  +
Sbjct: 553 SHLLLQLYSNFLKFGDPTPQPVQ 575


>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
          Length = 427

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 691 YYTNIKKNLRCSHRSTFVSFHSVCR-INPIESSFLCKV 581
           Y++NIK +L+  HR T      +C   NP  SS  C++
Sbjct: 146 YFSNIKSHLKVVHRKTLEDSSPLCSPENPRSSSIQCEI 183


>SB_37482| Best HMM Match : WD40 (HMM E-Value=1.1e-05)
          Length = 433

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 610 DLFYKLNEKKQKYYDESNEDSF*YLYNIIK 699
           DL  +++ K+++ + +SNE S   LYNI K
Sbjct: 48  DLLARISGKERETHQQSNEQSIYLLYNITK 77


>SB_4735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 374 YIFSIKSLSNKTSPEDQLMVDRMTTMWTNFAKFGD 478
           ++F I  LSN  SP D L+++R    W++ + + +
Sbjct: 27  HLFGIGVLSNSCSPGDPLVLERPPPRWSSNSPYSE 61


>SB_54313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 389 KSLSNKTSPEDQLMVDRMTTMWTNFAKFGD 478
           KSLSN  SP D L+++R    W++ + + +
Sbjct: 10  KSLSNSCSPGDPLVLERPPPRWSSNSPYSE 39


>SB_38487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 362 DELGYIFSIKSLSNKTSPEDQLMVDRMTTMWTNFAKFGD 478
           D +  +  ++SLSN  SP D L+++R    W++ + + +
Sbjct: 36  DVIRCLNKVQSLSNSCSPGDPLVLERPPPRWSSNSPYSE 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,288
Number of Sequences: 59808
Number of extensions: 468630
Number of successful extensions: 1300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)