Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0062
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    40   3e-05
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           40   3e-05
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    38   1e-04
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    26   0.42 
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   3.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   3.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.1  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 275 IYYYMFSYDGGRNLVKVSRGI-NAPGVAHADELGYIFSIKSLSNKTSPEDQLMVDRMTTM 451
           +++Y ++Y G  ++ ++  G  N  GV HAD+   +     L++ T+  D  M   +   
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDF 495

Query: 452 WTNFAKFGDPTPETTE 499
           W +F   G P   + +
Sbjct: 496 WVSFVNNGVPNVNSVQ 511


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 275 IYYYMFSYDGGRNLVKVSRGI-NAPGVAHADELGYIFSIKSLSNKTSPEDQLMVDRMTTM 451
           +++Y ++Y G  ++ ++  G  N  GV HAD+   +     L++ T+  D  M   +   
Sbjct: 436 VWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDF 495

Query: 452 WTNFAKFGDPTPETTE 499
           W +F   G P   + +
Sbjct: 496 WVSFVNNGVPNVNSVQ 511


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 251 IFEGHARNIYYYMFSYDGGRNLVKVSRGINAPGVAHADELGYIFSIK-SLSNKTSPEDQL 427
           +F      +YYY F+     NL          GV H DE+ Y+F    + S K S +++ 
Sbjct: 466 LFADRGMKVYYYFFTQRTSTNLWG-----EWMGVLHGDEVEYVFGHPLNKSLKYSDKERD 520

Query: 428 MVDRMTTMWTNFAKFGDPTPETTE 499
           +  RM   ++ FA  G PT E +E
Sbjct: 521 LSLRMILYFSEFAYLGKPTKEDSE 544


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 231 IQRTINKFLKDMLVIFTITCSLM 299
           +QR ++ F K+ML++FTI   L+
Sbjct: 53  LQRVVDWFRKNMLLVFTIAAVLV 75


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 272 YEHVLQKFIDSPLNGMNVNK 213
           Y+     F+D+PLN +  NK
Sbjct: 61  YQRYFTAFMDTPLNELPANK 80


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 272 YEHVLQKFIDSPLNGMNVNK 213
           Y+     F+D+PLN +  NK
Sbjct: 61  YQRYFTAFMDTPLNELPANK 80


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 65  GHFHHILKQNL*LR 106
           GHFH+I+  N+ +R
Sbjct: 128 GHFHNIIMPNVYIR 141


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 65  GHFHHILKQNL*LR 106
           GHFH+I+  N+ +R
Sbjct: 128 GHFHNIIMPNVYIR 141


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 269 EHVLQKFIDSPLNGMNVNKI*IIINYLPPFF 177
           ++ L + + + LNG N N    I +YL  FF
Sbjct: 280 DYFLFRSLQNSLNGKNFNNDDDIKSYLIQFF 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,640
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)