Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0062
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17500.1 68416.m02235 F-box family protein contains Pfam prof...    28   7.4  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    28   7.4  
At1g06410.1 68414.m00678 glycosyl transferase family 20 protein ...    28   7.4  
At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ...    27   9.8  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    27   9.8  
At1g74160.1 68414.m08589 expressed protein                             27   9.8  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    27   9.8  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    27   9.8  

>At3g17500.1 68416.m02235 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 438

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 132 QYVRQFYIGDDPITEEKRWEIINYDSDFVYIHPIQRTINKFLKDMLVIFTITCSLMTVGG 311
           +Y R+ Y+GD PI   + + + NY    V I P    I K  +  L +    C    V  
Sbjct: 333 KYYRELYVGDSPIRSHRPF-VFNYVPSLVQI-PQATVIPKRRRQQLSLVLQRCRASKV-D 389

Query: 312 IW 317
           +W
Sbjct: 390 VW 391


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 323  VSRGINAPGVAHADELGYIFSIKSLSNKTSPEDQLM-VDRMTTMWTNFAKFGD 478
            +SRG  A     +   GY +SI   +N    +D L  + R+ T+W N     D
Sbjct: 1771 ISRGQIASQYVVSAVTGYFYSIACAANAKGVDDSLQDILRLLTLWFNHGATAD 1823


>At1g06410.1 68414.m00678 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 851

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 FDSDTLEEMTQYVRQFYIGDDPITEEKRWEIINYDSDFVYIH 227
           F +D      + + + Y+  + +  +K  E+IN D DFV+IH
Sbjct: 162 FSADHGGRFDRSLWEAYVATNKLFFQKVIEVINPDDDFVWIH 203


>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 862

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 QFYIGDDPITEEKRWEIINYDSDFVYIH 227
           Q Y+  + I  +K  E+I+ D DFV++H
Sbjct: 178 QAYLSVNKIFADKVMEVISPDDDFVWVH 205


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 81  YLNKTFNFDSDTLEEMTQYVRQFYIGDDPITEEKRWEIINYDSDFVYI 224
           YLN+ F +     + M  +++ F+IGD+   + K+ E+   +   +Y+
Sbjct: 474 YLNEVFTWWHRIPKHMN-FLKHFWIGDEDDAKRKKTELFGAEPPVLYV 520


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 682 NIKKNLRCSHRSTFVSFHSVCRINPIESSF 593
           N+K+  R S  S+ VSF S C  +P  S F
Sbjct: 78  NVKEKRRVSTESSRVSFSSSCSSSPSSSEF 107


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 QFYIGDDPITEEKRWEIINYDSDFVYIH 227
           Q Y+  + I  ++  E+IN + DFV+IH
Sbjct: 186 QAYVSVNKIFADRIMEVINPEDDFVWIH 213


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 QFYIGDDPITEEKRWEIINYDSDFVYIH 227
           Q Y+  + I  ++  E+IN + DFV+IH
Sbjct: 186 QAYVSVNKIFADRIMEVINPEDDFVWIH 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,514
Number of Sequences: 28952
Number of extensions: 331550
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)