Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0061
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0196 + 13374054-13374456,13375145-13375707,13375935-133759...    29   2.9  
07_03_0179 + 14801037-14801108,14801325-14802788                       28   8.9  
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    28   8.9  

>09_03_0196 +
           13374054-13374456,13375145-13375707,13375935-13375976,
           13376059-13376087,13376309-13376534,13376970-13377008,
           13377126-13377155
          Length = 443

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 369 PILVTSSDYTRLTGRVGELTGL*PEDVANTNLSERSASRINHRIGSAT 226
           P LV      R+ G+VGEL  +     A T++ E  A +++  +G  T
Sbjct: 283 PPLVKGQKRERVKGKVGELAPVPKRGKAATSMPESKAGKVDPEVGHRT 330


>07_03_0179 + 14801037-14801108,14801325-14802788
          Length = 511

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -1

Query: 254 ESTTGSEVRHTEKIRQETQWAVSMGRCTNESEPER*EFHDSKNPI---DDFYENHRIVSQ 84
           E+    E+ H E +  E++   +    +   EPE  E H  K P    +D +E++   S 
Sbjct: 103 EAVPEVEIIHEESLHVESEPDSTADSSSQSQEPEEEEIHPPKIPFQFEEDLFEDYGNTSN 162

Query: 83  SKC 75
             C
Sbjct: 163 YSC 165


>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
            2565044-2565115,2565196-2565261,2565355-2565417,
            2565505-2565570,2565963-2566062,2567403-2567504,
            2567772-2567995,2568200-2568314,2568653-2568763,
            2568873-2569088,2569426-2569624,2570690-2570790,
            2570872-2570919,2571052-2571236,2571345-2571462,
            2571572-2571699,2571981-2572107,2572529-2572647,
            2572770-2572938,2573078-2573162,2573247-2573320,
            2573449-2573568,2574068-2574251,2574343-2574464,
            2574548-2574755,2574885-2574958,2575047-2575185,
            2575275-2575456,2575852-2576007,2576153-2576284,
            2576508-2576566,2576913-2576945,2577065-2577196,
            2577303-2577479
          Length = 1675

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 424  LLNLCVRCIEIKSEDLFKCLRCQ 492
            L N C R  +++ ED+ +CL+C+
Sbjct: 1401 LANQCSRSYKVRFEDIGRCLKCE 1423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,789
Number of Sequences: 37544
Number of extensions: 335498
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)