Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0061
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   3.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 181 PIDTAH*VS-CRIFSVCRTSDPVVDSRSTALAKVSVSNVLRLE 306
           PI   H    C    VCRT +PV+D     +A VS S V R E
Sbjct: 33  PISRTHYKDRCAYIFVCRTLEPVIDMCFHRMAGVSPSQVQRDE 75


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 297  EDVANTNLSERSASRINHRI-GSATH*EDPARNSVGCVYGQMY 172
            E V     SE + + + H+I G+  +  D  RNS+GC   ++Y
Sbjct: 3867 ESVTALESSENAVATLMHKIDGTLDNLSDEDRNSIGCSVTEIY 3909


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,464,002
Number of Sequences: 59808
Number of extensions: 408847
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)