Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0060
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065CAB7 Cluster: Probable palmitoyltransferase ZD...    34   4.0  
UniRef50_Q05FT5 Cluster: Putative replicative DNA helicase; n=1;...    33   9.2  

>UniRef50_UPI000065CAB7 Cluster: Probable palmitoyltransferase
           ZDHHC13 (EC 2.3.1.-) (Zinc finger DHHC domain-containing
           protein 13) (DHHC-13) (Huntingtin-interacting protein
           14-related protein) (HIP14-related protein) (Huntingtin-
           interacting protein HIP3RP) (Putative
           NF-kappa-B-activati; n=1; Takifugu rubripes|Rep:
           Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc
           finger DHHC domain-containing protein 13) (DHHC-13)
           (Huntingtin-interacting protein 14-related protein)
           (HIP14-related protein) (Huntingtin- interacting protein
           HIP3RP) (Putative NF-kappa-B-activati - Takifugu
           rubripes
          Length = 591

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 510 SLSLVGS---DCCL*DWKRTAASHVMFTQIEAKIWLGVMWSLVSVSQ*NNPSLLCLMFLA 680
           SL+L+GS    CCL  W    A H +    +  +W  V  +LV  S    P LLC+ FLA
Sbjct: 461 SLTLMGSWMFYCCLTYW----AKHCVLHYADQGLWAAVS-ALVDCS----PWLLCIFFLA 511

Query: 681 VYDSTW 698
            Y + W
Sbjct: 512 FYHTCW 517


>UniRef50_Q05FT5 Cluster: Putative replicative DNA helicase; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           replicative DNA helicase - Carsonella ruddii (strain PV)
          Length = 381

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +1

Query: 172 LYVSFAYKNNLFISILLVQFIQIMERSINLDNIVYRI 282
           + ++F  KNNL I+I+ + +IQ+M+  I+ +N V  I
Sbjct: 252 IQLNFYKKNNLIINIICIDYIQLMKSEISNNNRVLEI 288


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,696,644
Number of Sequences: 1657284
Number of extensions: 12575676
Number of successful extensions: 24026
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24024
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)