Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0060
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 172 VKSRMGTSECSGIRNIQGYTI--THFMKGQREHTSVNILTGKIVR 44
           VKS  G+ + SG+RN + Y I  T+   G+    ++ + + K+ R
Sbjct: 540 VKSLFGSHDESGLRNNESYPIGFTYKKYGEMSDNALRLASAKLER 584


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 80  MFPLTLHEMCNRVTLNISDS*AFRCAHSTFNC 175
           +  LTL  MCN     I  S A   +H  F+C
Sbjct: 865 LLQLTLRRMCNESEYTIGTSNAKDVSHFVFSC 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,369
Number of Sequences: 5004
Number of extensions: 58428
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)