Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0060
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551           28   8.5  
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660           28   8.5  
11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360           28   8.5  

>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
          Length = 475

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 558 TAASHVMFTQIEAKIWLGVMWSLVSVSQ*NNPSLLCLMFLAVYDSTWLLAE 710
           TA++H++   I + + L + W++  +     P+++ L    +Y ++ LLAE
Sbjct: 40  TASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVMLLFAFVIYYTSTLLAE 89


>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
          Length = 475

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 558 TAASHVMFTQIEAKIWLGVMWSLVSVSQ*NNPSLLCLMFLAVYDSTWLLAE 710
           TA++H++   I + + L + W++  +     P+++ L    +Y ++ LLAE
Sbjct: 40  TASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVMLLFAFVIYYTSTLLAE 89


>11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360
          Length = 445

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 558 TAASHVMFTQIEAKIWLGVMWSLVSVSQ*NNPSLLCLMFLAVYDSTWLLAE 710
           TA++H++   I + + L + W++  +     P+++ L    +Y ++ LLAE
Sbjct: 35  TASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVMLLFAFVIYYTSTLLAE 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,047
Number of Sequences: 37544
Number of extensions: 316784
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)