Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0059
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    33   0.031
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    29   0.51 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    28   1.6  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    27   2.1  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   6.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.3  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -2

Query: 258 RRDYVYIFSGEVSGYDESVEVSSDSF---TVIVYREDGAASEGERRSHNRVDRQQQRFTD 88
           RR+       EV   +E +E   D        +  E GA   G+ R H  +DRQ+Q    
Sbjct: 142 RRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQELQS 201

Query: 87  LRASPMKEVKYNIPFSQIETVRCSSSLVP 1
           + A  + E +Y   + + +TV   +S VP
Sbjct: 202 VDAERLAE-EYREKYGRSQTVVGDTSNVP 229


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 339 LMNSAINRPH*RALARPSVYNFDXDSSRRDYVYIFSGEVSGYDESVE 199
           ++++ IN P       PSV N   DS   D +Y   G + G DE++E
Sbjct: 199 VVHARINNPDDHLRTHPSVNNLGKDSDHADKMY-NEGVILGEDEAME 244


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 88  VSEPLLLSVNSIMTSSFSLARRTIFTIHN-HGETVAGNFNAFVIPAHLAAEDVNVIAS 258
           VS+ L+ S++ I + SFSL  + +F +HN  GE++        + A  ++++V  IAS
Sbjct: 316 VSDMLIQSLSIINSPSFSLG-KIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIAS 372


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 663 ET*RKNGAGIVQASALTATAGGIKVEI 583
           ET RK   GI+QAS LTA + G KV +
Sbjct: 89  ETYRKPCTGIMQASILTALSLGRKVSV 115


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 511 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 609
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 28  SFNLGERDVVFHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNA 207
           S N G+   + H F+R S +  + LL+   S +      ++   F        +   F  
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILLIWFESYLVEELDNSKSIFFLF-----KIYKVFEV 599

Query: 208 FVIPAHLAAEDV 243
           FV+P   +AE++
Sbjct: 600 FVVPHFASAEEL 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,915
Number of Sequences: 5004
Number of extensions: 52910
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)