Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0059
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  47   1e-05
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            43   3e-04
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      39   0.004
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   3.8  
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   6.7  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/62 (40%), Positives = 33/62 (53%)
 Frame = +1

Query: 448 SSHYCSGPISPRLDSQP*NSHPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 627
           S H+ +  +  RLD       P DA+ V+V+HT   L G     G +DFYP+GG  Q GC
Sbjct: 725 SIHFVNAHVDVRLD-------PSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGGKKQPGC 777

Query: 628 LD 633
            D
Sbjct: 778 RD 779


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +1

Query: 511 PDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDA 639
           P DA  V+V+HT     G     G +DFYP+GG  Q GC D A
Sbjct: 20  PSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGGKNQPGCRDIA 62


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 517 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 627
           DA  V+V+HT+  + G   P G +DFYP+GG+ Q GC
Sbjct: 225 DAQFVDVIHTSY-VFGITAPHGHMDFYPNGGTSQRGC 260


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 517 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 627
           DA  V+V+HT+A   G    +G  DFYP+GG  Q GC
Sbjct: 243 DALFVDVIHTSADY-GITSTIGHADFYPNGGKKQPGC 278


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 433 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 302
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 58  FHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAE 237
           F LF R  P +       V  +  S++   +RT    H + E+ + ++   +  A L  +
Sbjct: 72  FQLFTRSHPHLVSIDDSDVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKD 131

Query: 238 DVNVI 252
           DVNV+
Sbjct: 132 DVNVV 136


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 52  VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 189
           VV+H    +FH+  P V++P+L S +S +    ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,229,936
Number of Sequences: 59808
Number of extensions: 429508
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)