Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0059
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 219 GYDESVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQ 100
           GY  ++ +  D  TV   R     S+G R +HN +++ ++
Sbjct: 23  GYASTMPMPDDMRTV-TKRPKTKKSQGSRTTHNELEKNRR 61


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 461 ALDPSLHGWTHNPEI 505
           AL  +LH W H PEI
Sbjct: 465 ALCNTLHHWHHCPEI 479


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 406 STETKSDNANKLGIVAEGCSQDIDEFSN*ST 314
           STET +   N L      CSQ    +SN  T
Sbjct: 347 STETLNTKCNTLERTPSKCSQTSVHYSNGQT 377


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 9  GCYCSVQFQFGRTGCCISPLSSGKPSGQ 92
          GC C       RTG   S  SS    GQ
Sbjct: 2  GCLCECDLATPRTGTNCSSGSSSDSDGQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,537
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)