Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0059
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At2g28870.1 68415.m03509 expressed protein                             29   4.1  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    28   5.5  
At4g31790.2 68417.m04514 diphthine synthase, putative  (DPH5) si...    28   7.2  
At4g31790.1 68417.m04513 diphthine synthase, putative  (DPH5) si...    28   7.2  
At1g54430.1 68414.m06209 hypothetical protein                          28   7.2  
At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger) fa...    27   9.6  

>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 181 HRDCVS*RWCGERGRT 134
           HRDC+  RWC E+G T
Sbjct: 46  HRDCIQ-RWCDEKGNT 60


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 435 EFLAAIPAMCPPRPSPTMRISSES*LKV 352
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 97  PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 219
           PL+L+ NSI   S  +AR ++FT  N G ++  NF+   +P
Sbjct: 34  PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71


>At4g31790.2 68417.m04514 diphthine synthase, putative  (DPH5)
           similar to  Diphthine synthase (Diphtamide biosynthesis
           methyltransferase) (DPH5) (SP:P32469) [Saccharomyces
           cerevisiae]; similar to CGI-30 protein (GI:4680699)
           [Homo sapiens]; similar to methyltransferase DPH5,
           Saccharomyces cerevisiae, PIR2:S30890; contains Pfam
           PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases
           domain; contains TIGRFAMS TIGR00522 : diphthine synthase
          Length = 277

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 76  GSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAEDVNVIA 255
           G  Q   P  +SVN+ +     + ++       HG++V G     V  A L +ED  ++A
Sbjct: 184 GKKQYEPPRYMSVNTAIEQLLEVEQK-------HGDSVYGEDTQCVGFARLGSEDQTIVA 236

Query: 256 STGVXIEIIHRGS 294
            T   +E +  G+
Sbjct: 237 GTMKQLESVDFGA 249


>At4g31790.1 68417.m04513 diphthine synthase, putative  (DPH5)
           similar to  Diphthine synthase (Diphtamide biosynthesis
           methyltransferase) (DPH5) (SP:P32469) [Saccharomyces
           cerevisiae]; similar to CGI-30 protein (GI:4680699)
           [Homo sapiens]; similar to methyltransferase DPH5,
           Saccharomyces cerevisiae, PIR2:S30890; contains Pfam
           PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases
           domain; contains TIGRFAMS TIGR00522 : diphthine synthase
          Length = 277

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 76  GSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIPAHLAAEDVNVIA 255
           G  Q   P  +SVN+ +     + ++       HG++V G     V  A L +ED  ++A
Sbjct: 184 GKKQYEPPRYMSVNTAIEQLLEVEQK-------HGDSVYGEDTQCVGFARLGSEDQTIVA 236

Query: 256 STGVXIEIIHRGS 294
            T   +E +  G+
Sbjct: 237 GTMKQLESVDFGA 249


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 25  YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 114
           +S N+GERDV+ H    G  Q+S+  PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522


>At4g02075.1 68417.m00278 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING
          Length = 218

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 181 HRDCVS*RWCGERGRT 134
           HR+C+  RWC E+G T
Sbjct: 46  HRNCIQ-RWCNEKGNT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,037
Number of Sequences: 28952
Number of extensions: 295782
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)